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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE METAL BINDING PROTEIN RUMGNA_00854 (ZP_02040092.1) FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 1.30 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Oct 11  (Deposition) - 02 Nov 11  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  The Binding Protein, Transport Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Metal Binding Protein Rumgna_00854 (Zp_02040092. 1) From Ruminococcus Gnavus Atcc 29149 At 1. 30 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE METAL BINDING PROTEIN RUMGNA_00854
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RUMGNA_00854
    Organism Common: TBD
    Organism Scientific: RUMINOCOCCUS GNAVUS
    Organism Taxid: 411470
    Strain: ATCC 29149

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric Unit (2, 20)
No.NameCountTypeFull Name
1CA12Ligand/IonCALCIUM ION
2EDO8Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO5Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:73 , TYR A:131 , HOH A:197 , HOH A:217 , GLU B:75 , HOH B:170BINDING SITE FOR RESIDUE CA A 132
02AC2SOFTWAREGLU A:67 , ASN A:70 , VAL A:72 , ASP A:73 , TYR A:131 , HOH B:152BINDING SITE FOR RESIDUE CA A 133
03AC3SOFTWAREGLU A:54 , HOH A:189 , HOH A:193 , ASP B:87 , GLU B:88 , CA B:142BINDING SITE FOR RESIDUE CA A 136
04AC4SOFTWAREASP A:87 , HOH A:215 , HOH A:317 , GLU B:54 , HOH B:314BINDING SITE FOR RESIDUE CA A 138
05AC5SOFTWAREGLU A:88 , ASP A:119 , CA A:140 , HOH A:198 , HOH A:215 , HOH A:250 , HOH B:298BINDING SITE FOR RESIDUE CA A 139
06AC6SOFTWAREGLU A:36 , GLU A:88 , ASP A:119 , CA A:139 , GLU B:54BINDING SITE FOR RESIDUE CA A 140
07AC7SOFTWARETYR A:79 , LEU A:81 , HOH A:218BINDING SITE FOR RESIDUE EDO A 144
08AC8SOFTWARELEU A:81 , PHE A:82 , ILE A:83 , ILE A:101 , SER A:111 , ALA A:112 , HOH A:169BINDING SITE FOR RESIDUE EDO A 145
09AC9SOFTWAREASN A:70 , LEU A:71 , VAL A:72 , ASP A:73 , THR A:85 , ASP A:87 , GLU A:88 , HOH A:262BINDING SITE FOR RESIDUE EDO A 147
10BC1SOFTWAREHOH A:153 , GLU B:67 , ASN B:70 , VAL B:72 , ASP B:73 , TYR B:131BINDING SITE FOR RESIDUE CA B 134
11BC2SOFTWAREASP B:56 , HOH B:240 , HOH B:281 , HOH B:299 , HOH B:304BINDING SITE FOR RESIDUE CA B 135
12BC3SOFTWAREHOH A:256 , GLY B:120 , HOH B:270 , HOH B:278 , HOH B:282BINDING SITE FOR RESIDUE CA B 137
13BC4SOFTWAREGLU A:75 , HOH A:178 , ASP B:73 , TYR B:131 , HOH B:199 , HOH B:206BINDING SITE FOR RESIDUE CA B 141
14BC5SOFTWAREGLU A:54 , CA A:136 , HOH A:189 , HOH A:226 , HOH A:284 , GLU B:88 , ASP B:119 , HOH B:186BINDING SITE FOR RESIDUE CA B 142
15BC6SOFTWAREGLU A:36 , GLU A:106 , GLU B:50 , ASN B:51 , HOH B:253BINDING SITE FOR RESIDUE CA B 143
16BC7SOFTWAREASN B:70 , LEU B:71 , ASP B:73 , ASP B:87 , GLU B:88 , HOH B:245 , HOH B:260BINDING SITE FOR RESIDUE EDO B 146
17BC8SOFTWARELEU B:81 , PHE B:82 , ILE B:83 , ILE B:101 , SER B:111 , ALA B:112 , HOH B:171BINDING SITE FOR RESIDUE EDO B 148
18BC9SOFTWARETYR A:131 , TYR B:79BINDING SITE FOR RESIDUE EDO B 149
19CC1SOFTWAREASP B:93 , GLN B:96 , GLN B:97 , TRP B:98 , EDO B:151BINDING SITE FOR RESIDUE EDO B 150
20CC2SOFTWAREASP A:93 , ASP B:93 , GLN B:96 , EDO B:150BINDING SITE FOR RESIDUE EDO B 151

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U7Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3U7Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3U7Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3U7Z)

(-) Exons   (0, 0)

(no "Exon" information available for 3U7Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:97
 aligned with A7AZY1_RUMGN | A7AZY1 from UniProtKB/TrEMBL  Length:131

    Alignment length:97
                                    44        54        64        74        84        94       104       114       124       
         A7AZY1_RUMGN    35 GEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELTLKEGY 131
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....eeeeeeee...hhhhhhhhh..eeee......eeeee..ee.hhhh.eeeeeee..ee...hhhhh......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 3u7z A  35 GEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELTLKEGY 131
                                    44        54        64        74        84        94       104       114       124       


Chain B from PDB  Type:PROTEIN  Length:96
 aligned with A7AZY1_RUMGN | A7AZY1 from UniProtKB/TrEMBL  Length:131

    Alignment length:96
                                    45        55        65        75        85        95       105       115       125      
         A7AZY1_RUMGN    36 EKHITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELTLKEGY 131
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee.....eeeeeeee...hhhhhhhhh..eeee......eeeee..ee.hhhh.eeeeeee..ee...hhhhh......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 3u7z B  36 EKHITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELTLKEGY 131
                                    45        55        65        75        85        95       105       115       125
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3U7Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U7Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U7Z)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (A7AZY1_RUMGN | A7AZY1)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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