3U05 - JenaLib

Title :   CRYSTAL STRUCTURE OF DB1804-D(CGCGAATTCGCG)2 COMPLEX

Authors :   D. G. Wei, S. Neidle

Date :   28 Sep 11 (Deposition) - 12 Sep 12 (Release) - 08 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.27

Chains :   Asym./Biol. Unit : A,B

Keywords :   A2T2, Dickerson And Drew Dodecamer, Double Helix, Dna Minor Groove- Ligand Complex, Dna Minor Groove Binder, Db1804, Mg2+, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Wei, W. D. Wilson, S. Neidle
Small-Molecule Binding To The Dna Minor Groove Is Mediated By A Conserved Water Cluster.
J. Am. Chem. Soc. V. 135 1369 2013
PubMed-ID: 23276263 | Reference-DOI: 10.1021/JA308952Y

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:203 , HOH A:207 , HOH A:217 , HOH A:232 , HOH A:262 , HOH B:206	BINDING SITE FOR RESIDUE MG A 101
2	AC2	SOFTWARE	DA A:6 , DT A:7 , DT A:8 , DC A:9 , HOH A:272 , DA B:18 , DT B:19 , DT B:20 , DC B:21 , HOH B:225 , HOH B:245 , HOH B:271	BINDING SITE FOR RESIDUE 804 B 101

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:12
                                           
                  3u05 A  1 CGCGAATTCGCG 12
                                    10

Chain B from PDB  Type:DNA  Length:12
                                           
                  3u05 B 13 CGCGAATTCGCG 24
                                    22

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Cis Peptide Bonds
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Description