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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BACTERIAL A1408G-MUTANT AND THE PROTOZOA CYTOPLASMIC RIBOSOMAL DECODING SITE IN COMPLEX WITH GENETICIN
 
Authors :  J. Kondo
Date :  10 Aug 11  (Deposition) - 07 Dec 11  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Decoding, Ribosome, Rna-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Kondo
A Structural Basis For The Antibiotic Resistance Conferred By An A1408G Mutation In 16S Rrna And For The Antiprotozoal Activity Of Aminoglycosides
Angew. Chem. Int. Ed. Engl. V. 51 465 2012
PubMed-ID: 22110016  |  Reference-DOI: 10.1002/ANIE.201106084

(-) Compounds

Molecule 1 - RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU) P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
    Chains: A, B
    Engineered: YES
    Other Details: SYNTHETIC RNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
15BU2Mod. Nucleotide5-BROMO-URIDINE-5'-MONOPHOSPHATE
2GET2Ligand/IonGENETICIN

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:16 , A A:17 , A A:18 , G A:19 , U A:20 , HOH A:114 , HOH A:135 , C B:27 , G B:28 , U B:29 , C B:30 , G B:31 , C B:32 , HOH B:105 , HOH B:127 , HOH B:147 , HOH B:178 , HOH B:195 , HOH B:222BINDING SITE FOR RESIDUE GET B 50
2AC2SOFTWAREC A:4 , G A:5 , U A:6 , C A:7 , G A:8 , C A:9 , HOH A:172 , G B:39 , A B:40 , A B:41 , G B:42 , U B:43 , HOH B:110 , HOH B:115 , HOH B:121 , HOH B:130 , HOH B:149 , HOH B:157BINDING SITE FOR RESIDUE GET B 51

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TD1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TD1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TD1)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3TD1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:22
                                                     
                  3td1 A  2 UGCGUCGCGuCGACGAAGUCGC 23
                                    11        21  
                                    11-5BU        


Chain B from PDB  Type:RNA  Length:23
                                                      
                  3td1 B 24 UUGCGUCGCGuCGACGAAGUCGC 46
                                    33|       43   
                                     34-5BU
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TD1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TD1)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

1mwl CRYSTAL STRUCTURE OF THE BACTERIAL WILD-TYPE RIBOSOMAL DECODING SITE IN COMPLEX WITH GENETICIN
3td0 CRYSTAL STRUCTURE OF THE BACTERIAL A1408G-MUTANT AND THE PROTOZOA CYTOPLASMIC RIBOSOMAL DECODING SITE