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(-) Description

Title :  CRYSTAL STRUCTURE OF NICKEL ABC TRANSPORTER FROM BACILLUS HALODURANS
 
Authors :  R. Agarwal, J. B. Bonanno, S. Chamala, B. Evans, R. Foti, A. Gizzi, B. Hil A. Kar, J. Lafleur, R. Seidel, G. Villigas, W. Zencheck, S. C. Almo, S. Swaminathan, New York Structural Genomics Research Consort (Nysgrc)
Date :  28 Jul 11  (Deposition) - 17 Aug 11  (Release) - 17 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Periplasmic Protein, Nickel Abc Transporter, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Agarwal, J. B. Bonanno, S. C. Almo, S. Swaminathan
Crystal Structure Of Nickel Abc Transporter From Bacillus Halodurans
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NICKEL ABC TRANSPORTER (NICKEL-BINDING PROTEIN)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: NICKEL ABC TRANSPORTER
    Gene: BH1796
    Mutation: YES
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 272558
    Strain: C-125

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:128 , ASP A:179BINDING SITE FOR RESIDUE CA A 497

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3T66)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3T66)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3T66)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3T66)

(-) Exons   (0, 0)

(no "Exon" information available for 3T66)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:475
 aligned with Q9KBX8_BACHD | Q9KBX8 from UniProtKB/TrEMBL  Length:528

    Alignment length:476
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521      
         Q9KBX8_BACHD    52 EKHIHFLFNVSTNSLDPHVDMTYIPVRAGITETLVRVDEENVTIAPWLAESWDSTDGQHWTIKLREDVTFQNGKEMDAEAVKASLERALDESVAIENALKIDEIEADGYTLHITTKEPFPEFISELVNPNVSIIDVTEEDFTNHPVGTGPFALESFTPGSKLELVRYDEYWDGASKLDSVTFSFNEDASARSLALESGQADIVYRPEVESIETLQANEGIMVEATETFRTHNLTMNLDRDSLKDVNVRRAVDVLLDRQEIVDTIMLGYAEVADGPFIPTLPFAPSYEKKETGTDIAIQYLEEAGYTLENGQMQKDGEPLHFTVLTYGSRAELPLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLITYSNVTSPRGDAGYYLNATYHPTGALNFSSVNDPELTGIIDELNRTVDQDVRAKLTEQAAAYIDEQKIHSFLIHPSAVVAYDENKVKNWVTTRSEYYMITNQLDV 527
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............hhhhhh......eee......eee..eeeee.....eeeeee............hhhhhhhhhhhhhh.hhhhhhhhheeeeeee..eeeeee......hhhhhhhhhhh..................eeeeeee...eeeeee............eeeeee..hhhhhhhhhhh....eee.....hhhhhhhh..eeeeeee..eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh....eee....................hhhhhhhhhhhhh.ee..-.eee..ee.eeeeee.....hhhhhhhhhhhhhhhh..eeeeee....hhhhhh.....eeeeeee......hhhhhhhhhh...........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee....................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t66 A  12 EKHIHFLFNVSTNSLDPHVDMTYIPVRAGITETLVRVDEENVTIAPWLAESWDSTDGQHWTIKLREDVTFQNGKEMDAEAVKASLERALDESVAIENALKIDEIEADGYTLHITTKEPFPEFISELVNPNVSIIDVTEEDFTNHPVGTGPFALESFTPGSKLELVRYDEYWDGASKLDSVTFSFNEDASARSLALESGQADIVYRPEVESIETLQANEGIMVEATETFRTHNLTMNLDRDSLKDVNVRRAVDVLLDRQEIVDTIMLGYAEVADGPFIPTLPFAPSYEKKETGTDIAIQYLEEAGYTLEN-QMQKDGEPLHFTVLTYGSRAELPLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLITYSNVTSPRGDAGYYLNATYHPTGALNFSSVNDPELTGIIDELNRTVDQDVRAKLTEQAAAYIDEQKIHSFLIHPSAVVAYDENKVKNWVTTRSEYYMITNQLDV 487
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311        |-|      331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481      
                                                                                                                                                                                                                                                                                                                                              320 |                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                322
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3T66)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3T66)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3T66)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9KBX8_BACHD | Q9KBX8)
biological process
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
cellular component
    GO:0043190    ATP-binding cassette (ABC) transporter complex    A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter.

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