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(-) Description

Title :  PROHEAD RNA
 
Authors :  F. Ding, C. Lu, W. Zhano, K. R. Rajashankar, D. L. Anderson, P. J. Jardine S. Grimes, A. Ke
Date :  17 Mar 11  (Deposition) - 20 Apr 11  (Release) - 18 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Prohead Rna, Motor, Viral Packaging, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Ding, C. Lu, W. Zhao, K. R. Rajashankar, D. L. Anderson, P. J. Jardine S. Grimes, A. Ke
Structure And Assembly Of The Essential Rna Ring Component Of A Viral Dna Packaging Motor.
Proc. Natl. Acad. Sci. Usa V. 108 7357 2011
PubMed-ID: 21471452  |  Reference-DOI: 10.1073/PNAS.1016690108

(-) Compounds

Molecule 1 - PRNA
    Chains: A
    Engineered: YES
    Other Details: RNA WAS PREPARED BY IN VITRO TRANSCRIPTION WITH T7 RNA POLYMERASE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1MG9Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:1 , MG A:205BINDING SITE FOR RESIDUE MG A 200
2AC2SOFTWAREG A:29 , C A:32BINDING SITE FOR RESIDUE MG A 201
3AC3SOFTWAREU A:26 , A A:28 , G A:29BINDING SITE FOR RESIDUE MG A 202
4AC4SOFTWAREG A:1 , MG A:200BINDING SITE FOR RESIDUE MG A 205
5AC5SOFTWAREA A:8 , U A:9BINDING SITE FOR RESIDUE MG A 206
6AC6SOFTWAREA A:28BINDING SITE FOR RESIDUE MG A 207
7AC7SOFTWAREG A:27BINDING SITE FOR RESIDUE MG A 208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R4F)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:66
                                                                                                 
                  3r4f A  1 GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC 66
                                    10        20        30        40        50        60
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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3R4F)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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