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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN RUMGNA_01417 FROM RUMINOCOCCUS GNAVUS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET UGR76
 
Authors :  J. Seetharaman, M. Abashidze, S. Sahdev, R. Xiao, C. Ciccosanti, D. Lee J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J Northeast Structural Genomics Consortium (Nesg)
Date :  30 Jun 10  (Deposition) - 25 Aug 10  (Release) - 25 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Keywords :  Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, M. Abashidze, S. Sahdev, R. Xiao, C. Ciccosanti, D. Lee, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Northeast Structural Genomics Consortium Target Ugr76
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN RUMGNA_01417
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RUMGNA_01417
    Organism Scientific: RUMINOCOCCUS GNAVUS
    Organism Taxid: 411470
    Strain: ATCC 29149

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A 
Biological Unit 3 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:17 , HIS A:32 , CYS A:33BINDING SITE FOR RESIDUE SO4 A 82
2AC2SOFTWAREARG B:17 , HIS B:32 , CYS B:33BINDING SITE FOR RESIDUE SO4 B 82

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NRL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NRL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NRL)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3NRL)

(-) Sequences/Alignments

Asymmetric Unit
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  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:69
 aligned with A7B1J1_RUMGN | A7B1J1 from UniProtKB/TrEMBL  Length:73

    Alignment length:69
                                    14        24        34        44        54        64         
          A7B1J1_RUMGN    5 REGTLFYDTETGRYDIRFDLESFYGGLHCGECFDVKVKDVWVPVRIEMGDDWYLVGLNVSRLDGLRVRM 73
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeeeeee..ee........eeeeee..eeeeeeeee...eeee..........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  3nrl A  5 REGTLFYDTETGRYDIRFDLESFYGGLHCGECFDVKVKDVWVPVRIEmGDDWYLVGLNVSRLDGLRVRm 73
                                    14        24        34        44       |54        64        |
                                                                          52-MSE               73-MSE


Chain B from PDB  Type:PROTEIN  Length:69
 aligned with A7B1J1_RUMGN | A7B1J1 from UniProtKB/TrEMBL  Length:73

    Alignment length:69
                                    14        24        34        44        54        64         
          A7B1J1_RUMGN    5 REGTLFYDTETGRYDIRFDLESFYGGLHCGECFDVKVKDVWVPVRIEMGDDWYLVGLNVSRLDGLRVRM 73
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeee..ee........eeeeee..eeeeeeeee...eeee..........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  3nrl B  5 REGTLFYDTETGRYDIRFDLESFYGGLHCGECFDVKVKDVWVPVRIEmGDDWYLVGLNVSRLDGLRVRm 73
                                    14        24        34        44       |54        64        |
                                                                          52-MSE               73-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NRL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NRL)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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