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(-) Description

Title :  A DNA CRYSTAL DESIGNED TO CONTAIN TWO MOLECULES PER ASYMMETRIC UNIT CELL
 
Authors :  T. Wang, R. Sha, J. J. Birktoft, J. Zheng, M. Mao, N. C. Seeman
Date :  02 Jun 10  (Deposition) - 30 Nov 11  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  5.03
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D,E,F,G,H  (3x)
Keywords :  Nanotechnology, Dna Crossover, Designed Crystal Lattice, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Wang, R. Sha, J. Birktoft, J. Zheng, C. Mao, N. C. Seeman
A Dna Crystal Designed To Contain Two Molecules Per Asymmetric Unit.
J. Am. Chem. Soc. V. 132 15471 2010
PubMed-ID: 20958065  |  Reference-DOI: 10.1021/JA104833T

(-) Compounds

Molecule 1 - DNA (5'- D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)- 3')
    Chains: A
    Engineered: YES
    Other Details: DNA STRANDS WERE SYNTHESIZED BY STANDARD PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SYNTHESIZER USING TRITYL-ON MODE
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3')
    Chains: B
    Engineered: YES
    Fragment: SYMMETRICALLY- AND SEQUENTIALLY REPEATING UNIT OF CIRCULAR DNA MOLECULES, SEE REMARK 400 FOR DETAILS
    Other Details: DNA STRANDS WERE SYNTHESIZED BY STANDARD PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SYNTHESIZER USING TRITYL-ON MODE
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3')
    Chains: C
    Engineered: YES
    Fragment: LAST 6 RESIDUES OF A DNA MOLECULE USED IN EXPERIMENT, SEE REMARK 400 FOR DETAILS
    Other Details: DNA STRANDS WERE SYNTHESIZED BY STANDARD PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SYNTHESIZER USING TRITYL-ON MODE
    Synthetic: YES
 
Molecule 4 - DNA (5'-D(*CP*TP*TP*GP*AP*TP*GP*T)-3')
    Chains: D
    Engineered: YES
    Fragment: FIRST 8 RESIDUES OF A DNA MOLECULE USED IN EXPERIMENT, SEE REMARK 400 FOR DETAILS
    Other Details: DNA STRANDS WERE SYNTHESIZED BY STANDARD PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SYNTHESIZER USING TRITYL-ON MODE
    Synthetic: YES
 
Molecule 5 - DNA (5'- D(*AP*GP*CP*CP*TP*AP*CP*CP*TP*GP*CP*GP*TP*GP*GP*AP*CP*AP*GP*AP*C)- 3')
    Chains: E
    Engineered: YES
    Other Details: DNA STRANDS WERE SYNTHESIZED BY STANDARD PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SYNTHESIZER USING TRITYL-ON MODE
    Synthetic: YES
 
Molecule 6 - DNA (5'-D(P*CP*CP*AP*CP*GP*CP*A)-3')
    Chains: F
    Engineered: YES
    Fragment: SYMMETRICALLY- AND SEQUENTIALLY REPEATING UNIT OF A CIRCULAR DNA MOLECULES, SEE REMARK 400 FOR DETAILS
    Other Details: DNA STRANDS WERE SYNTHESIZED BY STANDARD PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SYNTHESIZER USING TRITYL-ON MODE
    Synthetic: YES
 
Molecule 7 - DNA (5'-D(P*GP*GP*TP*AP*GP*G)-3')
    Chains: G
    Engineered: YES
    Fragment: LAST 6 RESIDUES OF A DNA MOLECULE USED IN EXPERIMENT, SEE REMARK 400 FOR DETAILS
    Other Details: DNA STRANDS WERE SYNTHESIZED BY STANDARD PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SYNTHESIZER USING TRITYL-ON MODE
    Synthetic: YES
 
Molecule 8 - DNA (5'-D(*TP*CP*GP*TP*CP*TP*GP*T)-3')
    Chains: H
    Engineered: YES
    Fragment: FIRST 8 RESIDUES OF A DNA MOLECULE USED IN EXPERIMENT, SEE REMARK 400 FOR DETAILS
    Other Details: DNA STRANDS WERE SYNTHESIZED BY STANDARD PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SYNTHESIZER USING TRITYL-ON MODE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (3x): ABCDEFGH

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:21
                                                     
                 3nao A 101 GAGCAGCCTGTACGGACATCA 121
                                   110       120 


Chain B from PDB  Type:DNA  Length:7
                                       
                 3nao B 119 CCGTACA 125


Chain C from PDB  Type:DNA  Length:6
                                      
                 3nao C 109 GGCTGC 114


Chain D from PDB  Type:DNA  Length:8
                                        
                 3nao D 101 CTTGATGT 108


Chain E from PDB  Type:DNA  Length:21
                                                     
                 3nao E 101 AGCCTACCTGCGTGGACAGAC 121
                                   110       120 


Chain F from PDB  Type:DNA  Length:7
                                       
                 3nao F 119 CCACGCA 125


Chain G from PDB  Type:DNA  Length:6
                                      
                 3nao G 109 GGTAGG 114


Chain H from PDB  Type:DNA  Length:8
                                        
                 3nao H 101 TCGTCTGT 108
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 Classification and Annotation

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