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(-) Description

Title :  CRICKET PARALYSIS VIRUS IGR IRES DOMAIN 3 RNA BOUND TO SELENATE
 
Authors :  J. S. Kieft, E. Chase, D. A. Costantino, B. L. Golden
Date :  12 Apr 10  (Deposition) - 19 May 10  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  B,C
Keywords :  Rna Pseudoknot, Anions, Selenate, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Kieft, E. Chase, D. A. Costantino, B. L. Golden
Identification And Characterization Of Anion Binding Sites In Rna.
Rna V. 16 1118 2010
PubMed-ID: 20410239  |  Reference-DOI: 10.1261/RNA.2072710

(-) Compounds

Molecule 1 - DOMAIN 3 OF THE CRICKET PARALYSIS VIRUS INTERGENIC REGION IRES RNA
    Chains: B
    Engineered: YES
    Fragment: DOMAIN 3 RNA
    Mutation: YES
    Other Details: IN VITRO TRANSCRIPTION
    Synthetic: YES
 
Molecule 2 - RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')
    Chains: C
    Engineered: YES
    Fragment: DOMAIN 3 RNA
    Mutation: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1SE44Ligand/IonSELENATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG B:6183 , G B:6195 , A B:6196BINDING SITE FOR RESIDUE SE4 B 100
2AC2SOFTWAREC C:6214 , C C:6215BINDING SITE FOR RESIDUE SE4 C 101
3AC3SOFTWAREG C:6206 , A C:6207BINDING SITE FOR RESIDUE SE4 C 102
4AC4SOFTWAREC B:6201 , C B:6202BINDING SITE FOR RESIDUE SE4 B 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MJ3)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain B from PDB  Type:RNA  Length:29
                                                              
                3mj3 B 6174 GGUUAUUCAGAUUAGGUAGUCGAAUGACC 6202
                                  6183      6193         


Chain C from PDB  Type:RNA  Length:14
                                               
                3mj3 C 6203 UAAGAAAUUUACCU 6216
                                  6212
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MJ3)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3mja 3mjb