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(-) Description

Title :  COMPARISON BETWEEN THE ORTHORHOMBIC AN TETRAGONAL FORM OF THE HEPTAMER SEQUENCE D(GCG(XT)GCG)/D(CGCACGC).
 
Authors :  K. Robeyns, P. Herdewijn, L. Van Meervelt
Date :  29 Jan 10  (Deposition) - 18 Aug 10  (Release) - 22 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Double Helix, Cena, Sugar Modification, Right-Handed, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Robeyns, P. Herdewijn, L. Van Meervelt
Comparison Between The Orthorhombic And Tetragonal Forms Of The Heptamer Sequence D[Gcg(Xt)Gcg]/D(Cgcacgc)
Acta Crystallogr. , Sect. F V. 66 1028 2010
PubMed-ID: 20823518  |  Reference-DOI: 10.1107/S1744309110031696
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3')
    Chains: A
    Engineered: YES
    Other Details: SYNTHESIZED ON SOLID SUPPORT
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*CP*GP*CP*AP*CP*GP*C)-3')
    Chains: B
    Engineered: YES
    Other Details: SYNTHESIZED ON SOLID SUPPORT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1NCO1Ligand/IonCOBALT HEXAMMINE(III)
2XTR1Mod. Nucleotide[(1R,4S,6S)-6-HYDROXY-4-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)CYCLOHEX-2-EN-1-YL]METHYLDIHYDROGEN PHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:2 , XTR A:4 , DG A:5 , DA B:14BINDING SITE FOR RESIDUE NCO A 8

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:DNA  Length:7
                                      
                  3lln A  1 GCGtGCG  7
                               |   
                               |   
                               4-XTR


Chain B from PDB  Type:DNA  Length:7
                                      
                  3lln B 11 CGCACGC 17
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2h0n CONTAINS THE SAME TYPE OF SYNTHETIC NUCLEOSIDES
2p8d CONTAINS THE SAME TYPE OF SYNTHETIC NUCLEOSIDES
3fl6 IDENTICAL SEQUENCE