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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYCEROL UPTAKE OPERON ANTITERMINATOR REGULATORY PROTEIN FROM LISTERIA MONOCYTOGENES STR. 4B F2365
 
Authors :  Y. Patskovsky, R. Toro, J. Freeman, J. Do, J. M. Sauder, S. K. Burley, S. C York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  25 Nov 09  (Deposition) - 08 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Structural Genomics, Psi-2, Antiterminator, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Phosphoglycerol, Transcriptional Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, J. Freeman, J. Do, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Glycerol Uptake Operon Antiterminator Regulatory Protein From Listeria Monocytogenes Str. 4B F236
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYCEROL UPTAKE OPERON ANTITERMINATOR REGULATORY PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GLPP, LMOF2365_1424
    Organism Scientific: LISTERIA MONOCYTOGENES STR. 4B
    Organism Taxid: 265669
    Strain: F2365
    Synonym: G3P ANTITERMINATOR

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1UNL8Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 7 (1, 1)
No.NameCountTypeFull Name
1UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
1UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (0, 0)

(no "Site" information available for 3KTS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KTS)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Leu A:132 -Pro A:133
2Leu B:132 -Pro B:133
3Leu C:132 -Pro C:133
4Leu D:132 -Pro D:133
5Leu E:132 -Pro E:133
6Leu F:132 -Pro F:133
7Leu G:132 -Pro G:133
8Leu H:132 -Pro H:133

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KTS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KTS)

(-) Exons   (0, 0)

(no "Exon" information available for 3KTS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee..hhhhhhhh.....eeee..ee..hhhhhhhhhhhh..eeeee...ee....hhhhhhhhhhh....eeee.hhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhh..eeee....hhhhhhhhhh..eeeeee.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kts A   1 LELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEGH 185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180     


Chain B from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.hhhhhhhh......eeee..eehhhhhhhhhhhhhh..eeeee...ee....hhhhhhhhhhh....eeee.hhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhh.....eeee....hhhhhhhhhhh.eeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kts B   1 LELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEGH 185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180     


Chain C from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee...............eeee..eehhhhhhhhhhhhhh..eeeee...ee....hhhhhhhhhhh....eeee.hhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhh.....eeee....hhhhhhhhhhh.eeeeee.hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kts C   2 ELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWE 183
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181  


Chain D from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.hhhhhhhhhh....eeee..eehhhhhhhhhhhhhh..eeeee...ee....hhhhhhhhhhh....eeee.hhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhh..eeee....hhhhhhhhhh....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kts D   1 LELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWE 183
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180   


Chain E from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.hhhhhhhh......eeee..ee..hhhhhhhhhhhh..eeeee...ee....hhhhhhhhhhh....eeee.hhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeee.hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kts E   1 LELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEGH 185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180     


Chain F from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.hhhhhhhhh.....eeee..ee..hhhhhhhhhhhh..eeeee...ee....hhhhhhhhhhhh....eee.hhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh...eeee....hhhhhhhhhhh.eeeeee.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kts F   1 LELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEG 184
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    


Chain G from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee...hhhhhh......eeee..eehhhhhhhhhhhhhh..eeeee...ee....hhhhhhhhhhh.....eee.hhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhh.....eeee....hhhhhhhhhh..eeeeee..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kts G   1 LELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEGH 185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180     


Chain H from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee...hhhhhhhhh...eeee..ee..hhhhhhhhhhhh..eeeee...ee....hhhhhhhhhhh.....eee.hhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh...eeee....hhhhhhhhhhh.eeeeee.hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kts H   1 LELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEGH 185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

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(no "SCOP Domain" information available for 3KTS)

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