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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE CYSTATHIONINE BETA-LYASE INVOLVED IN ALUMINUM RESISTANCE (LMOF2365_1314) FROM LISTERIA MONOCYTOGENES STR. 4B F2365 AT 1.91 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  23 Sep 09  (Deposition) - 06 Oct 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Putative Cystathionine Beta-Lyase Involved In Aluminum Resistance, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Cystathionine Beta-Lyase Involved In Aluminum Resistance (Yp_013912. 1) From Listeria Monocytogenes 4B F2365 At 1. 91 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE CYSTATHIONINE BETA-LYASE INVOLVED IN ALUMINUM RESISTANCE
    Chains: A, B
    EC Number: 4.4.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LMOF2365_1314, YP_013912.1
    Organism Scientific: LISTERIA MONOCYTOGENES STR. 4B
    Organism Taxid: 265669
    Strain: F2365

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 22)

Asymmetric Unit (4, 22)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
3MSE16Mod. Amino AcidSELENOMETHIONINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (4, 44)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2LLP4Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
3MSE32Mod. Amino AcidSELENOMETHIONINE
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:8 , GLU A:12 , LYS A:397 , HOH A:531 , ASN B:20 , GLU B:24 , GLU B:27BINDING SITE FOR RESIDUE GOL A 409
2AC2SOFTWAREASP A:16BINDING SITE FOR RESIDUE PEG A 410
3AC3SOFTWAREGLU A:24 , GLU A:27 , ARG B:8 , GLU B:12 , LYS B:397BINDING SITE FOR RESIDUE GOL B 409
4AC4SOFTWARETYR A:53 , TYR A:55 , ILE A:258 , SER B:84 , THR B:86 , LLP B:226 , PRO B:352BINDING SITE FOR RESIDUE GOL B 410

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JZL)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asp A:305 -Pro A:306
2Glu A:381 -Pro A:382
3Asp B:305 -Pro B:306

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JZL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JZL)

(-) Exons   (0, 0)

(no "Exon" information available for 3JZL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh........hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeee.......hhhhhhh........hhhhh.eeee.........hhhhhhhhh...eeeeeee...........hhhhhhhhhhhhhhhh...eeeee...........hhhhh..eeeee..hhhhh......eeeeehhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee............eee..hhhhhhhhhhhhhhh....................eeee............eeeee.....eeeee...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jzl A   4 IQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKmTPKTKmIGIQRSRGYADRPSFTIEKIKEmIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIkNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEmYQGFFLAPHVTAQAIKGARFTAAmLAEFGVEADPVWDAPRTDLIQSVSFHNKEKmVAFAQAIQAASPVNAHVLPIGAYmPGYEDDVImAAGTFIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAVTRAIQKIV 408
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153 |     163       173       183|      193       203       213       223  |    233       243       253       263       273       283       293  |    303       313       323   |   333       343       353      |363       373       383       393       403     
                                                                                                                                                                                 155-MSE |                    184-MSE                                   226-LLP                                       272-MSE                 296-MSE                        327-MSE                 351-MSE  360-MSE                                            
                                                                                                                                                                                       161-MSE                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:394
                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh........hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh....eeee.....hhhhhhhhh..............eeee.........hhhhhhhhh...eeeeeee...........hhhhhhhhhhhhhhhh...eeeee..........hhhhhh..eeeee..hhhhh......eeeeehhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................ee.....hhhhhhhhhh...................................eee..eeee...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jzl B   4 IQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKmTPKTKmIGIQRSRGYADRPSFTIEKIKEmIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIkNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEmYQGFFLAPHVTAQAIKGARFTAAmLAEFGVEADPVWDAPRTDLIQSVSFHEKmVAFAQAIQAASPVNAHVLPIGAYmPGYEDImAAGTFIQGASLELTADGQLYVQGGLTYEHIKIAVTRAIQKI 407
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153 |     163       173       183|      193       203       213       223  |    233       243       253       263       273       283       293  |    303       313       325 |     335       345     | 355|||    367       377|      393       403    
                                                                                                                                                                                 155-MSE |                    184-MSE                                   226-LLP                                       272-MSE                 296-MSE                   322| |                     351-MSE6||              377|                       
                                                                                                                                                                                       161-MSE                                                                                                                                                           325 |                           359|               384                       
                                                                                                                                                                                                                                                                                                                                                           327-MSE                        360-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JZL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JZL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3JZL)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3JZL)

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