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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE MERR FAMILY TRANSCRIPTIONAL REGULATOR FROM LISTERIA MONOCYTOGENES
 
Authors :  U. A. Ramagopal, R. Toro, C. Morano, S. K. Burley, S. C. Almo, New York S Research Center For Structural Genomics (Nysgxrc)
Date :  20 Mar 09  (Deposition) - 21 Apr 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (3x)
Keywords :  Structural Genomics, Merr, Transcriptional Regulator, Dna-Binding, Transcription Regulator, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, R. Toro, C. Morano, S. K. Burley, S. C. Almo
Structure Of Putative Merr Family Transcriptional Regulator From Listeria Monocytogenes
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, MERR FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX4(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 20-150
    Gene: LMOF2365_2715
    Organism Scientific: LISTERIA MONOCYTOGENES STR. 4B F2365
    Organism Taxid: 265669
    Strain: F2365, SEROTYPE 4B

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MED1Ligand/IonD-METHIONINE
3NA1Ligand/IonSODIUM ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MED1Ligand/IonD-METHIONINE
3NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 9)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2MED3Ligand/IonD-METHIONINE
3NA-1Ligand/IonSODIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:38 , ARG A:69 , ARG A:72 , ILE A:78 , HOH A:241BINDING SITE FOR RESIDUE GOL A 2
2AC2SOFTWAREARG B:49 , GLY B:53 , ASP B:83 , LEU B:87 , HOH B:195 , HOH B:246BINDING SITE FOR RESIDUE GOL B 1
3AC3SOFTWARESER B:18 , GLU B:139 , HOH B:222 , HOH B:248 , HOH B:255BINDING SITE FOR RESIDUE NA B 159
4AC4SOFTWARELYS A:126 , TYR A:130 , TYR B:84 , PHE B:88BINDING SITE FOR RESIDUE MED B 513

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GP4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GP4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GP4)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhh.hhhhhhhhhhh................hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gp4 A  18 SLNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERS 149
                                    27        37        47        57        67        77        87        97       107       117       127       137       147  


Chain B from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh.hhhhhhhhhhh......ee.....ee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gp4 B  18 SLNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVE 147
                                    27        37        47        57        67        77        87        97       107       117       127       137       147
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GP4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GP4)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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