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(-) Description

Title :  STRUCTURE OF B-DNA D(CGTTAATTAACG)2 IN THE PRESENCE OF MANGANESE
 
Authors :  H. Millonig, J. Pous, L. J. Campos, J. A. Subirana
Date :  16 Sep 08  (Deposition) - 02 Jun 09  (Release) - 02 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  B-Dna, Manganese (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Millonig, J. Pous, C. Gouyette, J. A. Subirana, J. L. Campos
The Interaction Of Manganese Ions With Dna
J. Inorg. Biochem. V. 103 876 2009
PubMed-ID: 19375803  |  Reference-DOI: 10.1016/J.JINORGBIO.2009.03.004
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'- D(*DCP*DGP*DTP*DTP*DAP*DAP*DTP*DTP*DAP*DAP*DCP*DG)-3'
    Chains: A, B, C, D, E, F
    Engineered: YES
    Other Details: SYNTHESIZED BY USING THE PHOSPHORAMIDITE METHOD
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1MN7Ligand/IonMANGANESE (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:12 , DG B:12 , HOH B:42 , HOH F:42BINDING SITE FOR RESIDUE MN A 39
2AC2SOFTWAREDG B:12 , HOH B:36 , HOH B:38 , DG D:12BINDING SITE FOR RESIDUE MN B 35
3AC3SOFTWAREDG C:12 , DT F:7BINDING SITE FOR RESIDUE MN C 36
4AC4SOFTWAREDG C:12 , DG D:12BINDING SITE FOR RESIDUE MN C 41
5AC5SOFTWAREDT D:7 , HOH D:43 , DG E:12BINDING SITE FOR RESIDUE MN D 38
6AC6SOFTWAREDG A:12 , DG F:12 , HOH F:44 , HOH F:45BINDING SITE FOR RESIDUE MN F 37
7AC7SOFTWAREDG E:12 , DG F:12 , HOH F:41BINDING SITE FOR RESIDUE MN F 40

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3EIL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3EIL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:11
                                          
                  3eil A  2 GTTAATTAACG 12
                                    11 


Chain B from PDB  Type:DNA  Length:11
                                          
                  3eil B  2 GTTAATTAACG 12
                                    11 


Chain C from PDB  Type:DNA  Length:11
                                          
                  3eil C  2 GTTAATTAACG 12
                                    11 


Chain D from PDB  Type:DNA  Length:11
                                          
                  3eil D  2 GTTAATTAACG 12
                                    11 


Chain E from PDB  Type:DNA  Length:11
                                          
                  3eil E  2 GTTAATTAACG 12
                                    11 


Chain F from PDB  Type:DNA  Length:11
                                          
                  3eil F  2 GTTAATTAACG 12
                                    11
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3EIL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3EIL)

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(-) Gene Ontology  (0, 0)

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