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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PUTATIVE HISTIDINOL PHOSPHATASE HISK FROM LISTERIA MONOCYTOGENES. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LMR141.
 
Authors :  S. M. Vorobiev, M. Su, J. Seetharaman, L. Zhao, L. Mao, E. L. Foote, R. Xiao, R. Nair, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  04 Jun 08  (Deposition) - 29 Jul 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Histidinol Phosphatase, Hisk, Histidine Biosynthesis, Nesg, Lmr141, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. M. Vorobiev, M. Su, J. Seetharaman, L. Zhao, L. Mao, E. L. Foote, R. Xiao, R. Nair, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Putative Histidinol Phosphatase Hisk From Listeria Monocytogenes.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HISTIDINOL-PHOSPHATASE
    ChainsA, B, C
    EC Number3.1.3.15
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3) + MAGIC
    GeneHISK, LMOH7858_0629
    Organism ScientificLISTERIA MONOCYTOGENES STR. 4B H7858
    Organism Taxid267410
    StrainLI 2 (GENOME NOT SEQUENCED)

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)A  
Biological Unit 2 (1x) B 
Biological Unit 3 (1x)  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 32)

Asymmetric Unit (3, 32)
No.NameCountTypeFull Name
1FE6Ligand/IonFE (III) ION
2MSE23Mod. Amino AcidSELENOMETHIONINE
3ZN3Ligand/IonZINC ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2MSE7Mod. Amino AcidSELENOMETHIONINE
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 8)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
3ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:14 , HIS A:40 , HIS A:260BINDING SITE FOR RESIDUE ZN A 301
2AC2SOFTWAREHIS B:14 , HIS B:40 , HIS B:260BINDING SITE FOR RESIDUE ZN B 302
3AC3SOFTWAREHIS C:14 , HIS C:40 , HIS C:260BINDING SITE FOR RESIDUE ZN C 303
4AC4SOFTWAREGLU A:93 , HIS A:123 , HIS A:181BINDING SITE FOR RESIDUE FE A 310
5AC5SOFTWAREHIS A:6 , HIS A:8 , GLU A:93 , ASP A:258BINDING SITE FOR RESIDUE FE A 311
6AC6SOFTWAREHIS B:6 , HIS B:8 , GLU B:93 , ASP B:258BINDING SITE FOR RESIDUE FE B 320
7AC7SOFTWAREGLU B:93 , HIS B:123 , HIS B:181BINDING SITE FOR RESIDUE FE B 321
8AC8SOFTWAREGLU C:93 , HIS C:123 , HIS C:181BINDING SITE FOR RESIDUE FE C 330
9AC9SOFTWAREHIS C:6 , HIS C:8 , GLU C:93 , ASP C:258BINDING SITE FOR RESIDUE FE C 331

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DCP)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Tyr A:237 -Pro A:238
2Tyr B:237 -Pro B:238
3Tyr C:237 -Pro C:238

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DCP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DCP)

(-) Exons   (0, 0)

(no "Exon" information available for 3DCP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhhhh...eeeeeee...hhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhh....eeeeeeeee....hhhhhhhhhhhhhhhh.eeeee..eeee..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ee...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh........hhhhhhhhhhh...eeee....hhhhh..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dcp A   1 mKRDGHTHTEFCPHGTHDDVEEmVLKAIELDFDEYSIVEHAPLSSEFmKNTAGDKEAVTTASmAmSDLPYYFKKmNHIKKKYASDLLIHIGFEVDYLIGYEDFTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYLEGVKQSIEADLGLFKPRRmGHISLCQKFQQFFGEDTSDFSEEVmEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSHGVQDIGRGYSTYCQKLE 277
                            |       10        20  |     30        40       |50        60  | |   70    |   80        90       100       110       120       130       140       150       160       170       180       190       200   |   210       220       230       240       250       260       270       
                            |                    23-MSE                   48-MSE         63-MSE      75-MSE                                                                                                 179-MSE                  204-MSE                                                                     
                            1-MSE                                                          65-MSE                                                                                                                                                                                                                

Chain B from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...........hhhhhhhhhhhh...eeeeeee.....hhhhhh...hhhhhh...hhhhhhhhhhhhhhhhhhh....eeeeeeeee....hhhhhhhhhhhhhhhh.eeeee..eeee..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ee...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.eeeee..............hhhhhhhhhhh...eeee....hhhhh..hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dcp B   2 KRDGHTHTEFCPHGTHDDVEEmVLKAIELDFDEYSIVEHAPLSSEFmKNTAGDKEAVTTASmAmSDLPYYFKKmNHIKKKYASDLLIHIGFEVDYLIGYEDFTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYLEGVKQSIEADLGLFKPRRmGHISLCQKFQQFFGEDTSDFSEEVmEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSHGVQDIGRGYSTYC 273
                                    11        21 |      31        41      | 51        61 | |    71   |    81        91       101       111       121       131       141       151       161       171       181       191       201  |    211       221       231       241       251       261       271  
                                                23-MSE                   48-MSE         63-MSE      75-MSE                                                                                                 179-MSE                  204-MSE                                                                 
                                                                                          65-MSE                                                                                                                                                                                                            

Chain C from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhhhh...eeeeeee.....hhhhhh...hhhhhh...hhhhhhhhhhhhhhhhhhh....eeeeeeeee....hhhhhhhhhhhhhhhh.eeeee..eeee..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ee...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh........hhhhhhhhhh....eeee....hhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dcp C   1 mKRDGHTHTEFCPHGTHDDVEEmVLKAIELDFDEYSIVEHAPLSSEFmKNTAGDKEAVTTASmAmSDLPYYFKKmNHIKKKYASDLLIHIGFEVDYLIGYEDFTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYLEGVKQSIEADLGLFKPRRmGHISLCQKFQQFFGEDTSDFSEEVmEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSHGVQDIGRGYSTY 272
                            |       10        20  |     30        40       |50        60  | |   70    |   80        90       100       110       120       130       140       150       160       170       180       190       200   |   210       220       230       240       250       260       270  
                            1-MSE                23-MSE                   48-MSE         63-MSE      75-MSE                                                                                                 179-MSE                  204-MSE                                                                
                                                                                           65-MSE                                                                                                                                                                                                           

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DCP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3DCP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DCP)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3DCP)

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