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(-) Description

Title :  CRYSTAL STRUCTURE OF D(CGCGGATF5UCGCG): 5-FORMYLURIDINE/GUANOSINE BASE-PAIR IN B-DNA
 
Authors :  M. Tsunoda, T. Sakaue, Y. Ueno, A. Matsuda, A. Takenaka
Date :  07 Jun 10  (Deposition) - 27 Apr 11  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.02
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Modified Nucleotide, Formyluridine, Dna Damage, B-Dna, Double Helix, Deoxyribonucleic Acid, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Tsunoda, T. Sakaue, S. Naito, T. Sunami, N. Abe, Y. Ueno, A. Matsuda, A. Takenaka
Insights Into The Structures Of Dna Damaged By Hydroxyl Radical: Crystal Structures Of Dna Duplexes Containing 5-Formyluracil
J Nucleic Acids V. 2010 10728 2010
PubMed-ID: 20976303  |  Reference-DOI: 10.4061/2010/107289

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*CP*GP*GP*AP*TP*(UFR)P*CP*GP*CP*G)-3'
    ChainsA, B
    EngineeredYES
    Other DetailsSYNTHETIC DNA
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1UFR2Mod. Nucleotide2'-DEOXY-5-FORMYLURIDINE 5'-(DIHYDROGEN PHOSPHATE)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  3ajj A  1 CGCGGATxCGCG 12
                                   |10  
                                   8-UFR

Chain B from PDB  Type:DNA  Length:12
                                           
                  3ajj B 13 CGCGGATxCGCG 24
                                   |22  
                                  20-UFR

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3AJJ)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

3ajk THE SAME DNA WITH HOECHST 33258
3ajl THE SAME DNA WITH HOECHST DAPI