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(-) Description

Title :  CRYSTAL STRUCTURE OF (PRO-PRO-GLY)4-HYP-SER-GLY-(PRO-PRO-GLY)4
 
Authors :  K. Okuyama, K. Miyama, K. Masakiyo, K. Mizuno, H. P. Bachinger
Date :  22 Jan 10  (Deposition) - 19 Jan 11  (Release) - 27 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.18
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Collagen, Triple Helix, Model Peptide, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Okuyama, K. Miyama, T. Morimoto, K. Masakiyo, K. Mizuno, H. P. Bachinger
Stabilization Of Triple-Helical Structures Of Collagen Peptides Containing A Hyp-Thr-Gly, Hyp-Val-Gly, Or Hyp-Ser-Gly Sequence.
Biopolymers V. 95 628 2011
PubMed-ID: 21442606  |  Reference-DOI: 10.1002/BIP.21625

(-) Compounds

Molecule 1 - COLLAGEN-LIKE PEPTIDE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Other Details: THIS PEPTIDE WAS CHEMICALLY SYSTHESIZED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1HYP6Mod. Amino Acid4-HYDROXYPROLINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1HYP3Mod. Amino Acid4-HYDROXYPROLINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1HYP3Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (0, 0)

(no "Site" information available for 3ADM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ADM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ADM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ADM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ADM)

(-) Exons   (0, 0)

(no "Exon" information available for 3ADM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  3adm A  1 PPGPPGPPGPPGpSGPPGPPGPPGPPG 27
                                    10  |     20       
                                       13-HYP          


Chain B from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  3adm B  1 PPGPPGPPGPPGpSGPPGPPGPPGPPG 27
                                    10  |     20       
                                       13-HYP          


Chain C from PDB  Type:PROTEIN  Length:26
                                                         
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .......................... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3adm C  2 PGPPGPPGPPGpSGPPGPPGPPGPPG 27
                                    11 |      21      
                                      13-HYP          


Chain D from PDB  Type:PROTEIN  Length:26
                                                         
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .......................... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3adm D  1 PPGPPGPPGPPGpSGPPGPPGPPGPP 26
                                    10  |     20      
                                       13-HYP         


Chain E from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  3adm E  1 PPGPPGPPGPPGpSGPPGPPGPPGPPG 27
                                    10  |     20       
                                       13-HYP          


Chain F from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  3adm F  1 PPGPPGPPGPPGpSGPPGPPGPPGPPG 27
                                    10  |     20       
                                       13-HYP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ADM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ADM)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3ADM)

(-) Related Entries Specified in the PDB File

3a08 THE SIMILAR HOST-GUEST PEPTIDE
3a0a THE SIMILAR HOST-GUEST PEPTIDE
3a0m THE SIMILAR HOST-GUEST PEPTIDE
3a19 THE SIMILAR HOST-GUEST PEPTIDE
3a1h THE SIMILAR HOST-GUEST PEPTIDE
3abn THE SIMILAR HOST-GUEST PEPTIDE