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(-) Description

Title :  CRYSTAL STRUCTURE OF (PRO-PRO-GLY)4-HYP-ASP-GLY-(PRO-PRO-GLY)4 AT 1.02 A
 
Authors :  K. Okuyama, M. Shimura, T. Kawaguchi, K. Noguchi, K. Mizuno, H. P. Bachi
Date :  16 Dec 09  (Deposition) - 01 Dec 10  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.02
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Collagen-Helix, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Okuyama, T. Kawaguchi, M. Shimura, K. Noguchi, K. Mizuno, H. P. Bachinger
Crystal Structure Of The Collagen Model Peptide (Pro-Pro-Gly)4 -Hyp-Asp-Gly-(Pro-Pro-Gly)4 At 1. 0 Angstrom Resolution.
Biopolymers V. 99 436 2013
PubMed-ID: 23616212  |  Reference-DOI: 10.1002/BIP.22198

(-) Compounds

Molecule 1 - COLLAGEN-LIKE PEPTIDE
    Chains: A, B, C
    Engineered: YES
    Other Details: THIS PEPTIDE WAS CHEMICALLY SYSTHESIZED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1HYP3Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (0, 0)

(no "Site" information available for 3ABN)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ABN)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3ABN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  3abn A  1 PPGPPGPPGPPGpDGPPGPPGPPGPPG 27
                                    10  |     20       
                                       13-HYP          


Chain B from PDB  Type:PROTEIN  Length:25
                                                        
               SCOP domains ------------------------- SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author ......................... Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                  3abn B  2 PGPPGPPGPPGpDGPPGPPGPPGPP 26
                                    11 |      21     
                                      13-HYP         


Chain C from PDB  Type:PROTEIN  Length:24
                                                       
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ........................ Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                  3abn C  4 PPGPPGPPGpDGPPGPPGPPGPPG 27
                                    13        23    
                                    13-HYP
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ABN)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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2drx THE SIMILAR HOST-GUEST PEPTIDE
3a08 THE SIMILAR HOST-GUEST PEPTIDE
3a0m THE SIMILAR HOST-GUEST PEPTIDE
3a19 THE SIMILAR HOST-GUEST PEPTIDE