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(-) Description

Title :  CRYSTAL STRUCTURE OF THE KRT10-BINDING REGION DOMAIN OF THE PNEUMOCOCCAL SERINE RICH REPEAT PROTEIN PSRP
 
Authors :  T. Schulte, J. Loefling, C. Mikaelsson, A. Kikhney, K. Hentrich, A. Dia C. Ebel, S. Normark, D. Svergun, B. Henriques-Normark, A. Achour
Date :  17 Dec 12  (Deposition) - 25 Dec 13  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Structural Protein, Adhesin, Keratin-10, Srrp (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Schulte, J. Lofling, C. Mikaelsson, A. Kikhney, K. Hentrich, A. Diamante, C. Ebel, S. Normark, D. Svergun, B. Henriques-Normark, A. Achour
The Basic Keratin 10-Binding Domain Of The Virulence- Associated Pneumococcal Serine-Rich Protein Psrp Adopts A Novel Mscramm Fold.
Open Biol. V. 4 0090 2014
PubMed-ID: 24430336  |  Reference-DOI: 10.1098/RSOB.130090

(-) Compounds

Molecule 1 - CELL WALL SURFACE ANCHOR FAMILY PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: KRT10-BINDING REGION DOMAIN, RESIDUES 188-386
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric Unit (3, 19)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO46Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:311 , GLN A:312 , GLY A:313 , LYS C:331BINDING SITE FOR RESIDUE SO4 A1379
2AC2SOFTWARELYS A:285 , HOH A:2012 , PRO C:262 , GLN C:300 , SER C:303 , HOH C:2051BINDING SITE FOR RESIDUE SO4 A1380
3AC3SOFTWAREALA B:205 , LYS B:206 , ASN B:233 , GLY B:235BINDING SITE FOR RESIDUE SO4 B1378
4AC4SOFTWAREARG B:261 , PRO B:262 , SER B:303 , HOH B:2064BINDING SITE FOR RESIDUE SO4 B1379
5AC5SOFTWARETHR B:213 , ASN B:248 , THR B:344 , HOH B:2065BINDING SITE FOR RESIDUE EDO B1380
6AC6SOFTWAREILE C:204 , ALA C:205 , LYS C:206 , ASN C:233 , ASP C:234 , GLY C:235BINDING SITE FOR RESIDUE SO4 C1378
7AC7SOFTWAREHOH B:2006 , THR C:209BINDING SITE FOR RESIDUE SO4 C1379

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZGI)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asn A:368 -Gly A:369
2Gln B:312 -Gly B:313
3Gln C:312 -Gly C:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZGI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZGI)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZGI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with A0A0H2URK1_S | A0A0H2URK1 from UniProtKB/TrEMBL  Length:4776

    Alignment length:174
                                   213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373    
         A0A0H2URK1_S   204 IAKSETKVYTGEGVDSVYRVPIYYKLKVTNDGSKLTFTYTVTYVNPKTNDLGNISSMRPGYSIYNSGTSTQTMLTLGSDLGKPSGVKNYITDKNGRQVLSYNTSTMTTQGSGYTWGNGAQMNGFFAKKGYGLTSSWTVPITGTDTSFTFTPYAARTDRIGINYFNGGGKVVESS 377
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeeee....eeeeeeeeeee...eeeeeeeee...................eee.........eee.........eeeeee.....eeeeeeee.eeee..eeee....eeehhhhh...eeeeeeeee.......eee....ee..............eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zgi A 204 IAKSETKVYTGEGVDSVYRVPIYYKLKVTNDGSKLTFTYTVTYVNPKTNDLGNISSmRPGYSIYNSGTSTQTmLTLGSDLGKPSGVKNYITDKNGRQVLSYNTSTmTTQGSGYTWGNGAQmNGFFAKKGYGLTSSWTVPITGTDTSFTFTPYAARTDRIGINYFNGGGKVVESS 377
                                   213       223       233       243       253      |263       273  |    283       293       303     | 313       323|      333       343       353       363       373    
                                                                                  260-MSE         276-MSE                          309-MSE        324-MSE                                                 


Chain B from PDB  Type:PROTEIN  Length:174
 aligned with A0A0H2URK1_S | A0A0H2URK1 from UniProtKB/TrEMBL  Length:4776

    Alignment length:174
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372    
         A0A0H2URK1_S   203 NIAKSETKVYTGEGVDSVYRVPIYYKLKVTNDGSKLTFTYTVTYVNPKTNDLGNISSMRPGYSIYNSGTSTQTMLTLGSDLGKPSGVKNYITDKNGRQVLSYNTSTMTTQGSGYTWGNGAQMNGFFAKKGYGLTSSWTVPITGTDTSFTFTPYAARTDRIGINYFNGGGKVVES 376
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeeeee....eeeeeeeeeee...eeeeeeeee.ee....ee..........eee.........eee..........eeeee.....eeee.....eee....eee....eeehhhhh...eeeeeeeee.......eee....ee..............eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zgi B 203 NIAKSETKVYTGEGVDSVYRVPIYYKLKVTNDGSKLTFTYTVTYVNPKTNDLGNISSmRPGYSIYNSGTSTQTmLTLGSDLGKPSGVKNYITDKNGRQVLSYNTSTmTTQGSGYTWGNGAQmNGFFAKKGYGLTSSWTVPITGTDTSFTFTPYAARTDRIGINYFNGGGKVVES 376
                                   212       222       232       242       252       262       272   |   282       292       302      |312       322 |     332       342       352       362       372    
                                                                                   260-MSE         276-MSE                          309-MSE        324-MSE                                                


Chain C from PDB  Type:PROTEIN  Length:174
 aligned with A0A0H2URK1_S | A0A0H2URK1 from UniProtKB/TrEMBL  Length:4776

    Alignment length:174
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372    
         A0A0H2URK1_S   203 NIAKSETKVYTGEGVDSVYRVPIYYKLKVTNDGSKLTFTYTVTYVNPKTNDLGNISSMRPGYSIYNSGTSTQTMLTLGSDLGKPSGVKNYITDKNGRQVLSYNTSTMTTQGSGYTWGNGAQMNGFFAKKGYGLTSSWTVPITGTDTSFTFTPYAARTDRIGINYFNGGGKVVES 376
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeeeee....eeeeeeeeeee...eeeeeeeee.ee....ee..........eee.........eee..........eeeee.....eeee.....eee....eee....eeehhhhh...eeeeeeeee.......eee....ee..............eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zgi C 203 NIAKSETKVYTGEGVDSVYRVPIYYKLKVTNDGSKLTFTYTVTYVNPKTNDLGNISSmRPGYSIYNSGTSTQTmLTLGSDLGKPSGVKNYITDKNGRQVLSYNTSTmTTQGSGYTWGNGAQmNGFFAKKGYGLTSSWTVPITGTDTSFTFTPYAARTDRIGINYFNGGGKVVES 376
                                   212       222       232       242       252       262       272   |   282       292       302      |312       322 |     332       342       352       362       372    
                                                                                   260-MSE         276-MSE                          309-MSE        324-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZGI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZGI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZGI)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3ZGI)

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    Asn A:368 - Gly A:369   [ RasMol ]  
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        A0A0H2URK1_S | A0A0H2URK1: 3zgh 5jui

(-) Related Entries Specified in the PDB File

3zgh CRYSTAL STRUCTURE OF THE KRT10-BINDING REGION DOMAIN OF THE PNEUMOCOCCAL SERINE RICH REPEAT PROTEIN PSRP