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(-) Description

Title :  CRYSTAL STRUCTURE OF SYMFOIL-4P/PV1: DE NOVO DESIGNED BETA-TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE, PRIMITIVE VERSION 1
 
Authors :  M. Blaber, J. Lee
Date :  05 Jan 11  (Deposition) - 11 Jan 12  (Release) - 20 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Trefoil, Beta-Terfoil, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. M. Longo, J. Lee, M. Blaber
Simplified Protein Design Biased For Prebiotic Amino Acids Yields A Foldable, Halophilic Protein.
Proc. Natl. Acad. Sci. Usa V. 110 2135 2013
PubMed-ID: 23341608  |  Reference-DOI: 10.1073/PNAS.1219530110

(-) Compounds

Molecule 1 - DE NOVO DESIGNED BETA-TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE
    Chains: A
    Engineered: YES
    Other Details: SYNTHETIC SEQUENCE DERIVED FROM HUMAN ACIDIC FIBROBLAST GROWTH FACTOR WITH A SYMMETRIC DECONSTRUCTION METHOD. THE PROTEIN PRODUCED BY THIS SEQUENCE ADOPTS A BETA-TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:76 , ARG A:76A , ASP A:77 , THR A:123 , ARG A:123A , ASP A:124 , HOH A:223 , HOH A:284 , HOH A:321BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWARETHR A:30 , VAL A:31 , THR A:72 , VAL A:73 , THR A:116 , VAL A:117 , HOH A:195 , HOH A:230 , HOH A:240BINDING SITE FOR RESIDUE TRS A 141

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3Q7X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3Q7X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3Q7X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3Q7X)

(-) Exons   (0, 0)

(no "Exon" information available for 3Q7X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:125
                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....eeee.....eeee....hhhh.eeeeeee..eeeeee.....eeee.....eeee....hhhh.eeeeeee..eeeeee.....eeee.....eeee....hhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                3q7x A    0 HEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEG  138
                            ||      19        29        39        49        59        69       |78        88        98    || 111      123A       133     
                            ||                                                               76A                        103|         119||               
                            0|                                                                                           107          123|               
                            11                                                                                                        123A
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3Q7X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q7X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3Q7X)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3Q7X)

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  3q7x
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1jqz HUMAN ACIDIC FIBROBLAST GROWTH FACTOR. 141 AMINO ACID FORM WITH AMINO TERMINAL HIS TAG
3o4d CRYSTAL STRUCTURE OF SYMFOIL-4P: DE NOVO DESIGNED BETA- TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE
3q7w
3q7y