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(-) Description

Title :  CRYSTAL STRUCTURE OF MBL COLLAGEN-LIKE PEPTIDE
 
Authors :  A. R. Gingras, P. C. E. Moody, R. Wallis
Date :  22 Nov 10  (Deposition) - 24 Aug 11  (Release) - 30 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A,B,C  (2x)
Biol. Unit 3:  A,B,C  (2x)
Keywords :  Collagen Peptide, Complement Proteins, Lectin Pathway Of Complement, Masp-1 Cub1 And Cub2 Domains, Bloodstream, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Gingras, U. V. Girija, A. H. Keeble, R. Panchal, D. A. Mitchell, P. C. Moody, R. Wallis
Structural Basis Of Mannan-Binding Lectin Recognition By It Associated Serine Protease Masp-1: Implications For Complement Activation.
Structure V. 19 1635 2011
PubMed-ID: 22078562  |  Reference-DOI: 10.1016/J.STR.2011.08.014

(-) Compounds

Molecule 1 - MBL COLLAGEN-LIKE PEPTIDE
    Chains: A, B, C
    Engineered: YES
    Other Details: PEPTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (2x): ABC
Biological Unit 3 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 26)

Asymmetric Unit (3, 26)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2HYP21Mod. Amino Acid4-HYDROXYPROLINE
3NH22Mod. Amino AcidAMINO GROUP
Biological Unit 1 (3, 26)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2HYP21Mod. Amino Acid4-HYDROXYPROLINE
3NH22Mod. Amino AcidAMINO GROUP
Biological Unit 2 (3, 52)
No.NameCountTypeFull Name
1ACE6Mod. Amino AcidACETYL GROUP
2HYP42Mod. Amino Acid4-HYDROXYPROLINE
3NH24Mod. Amino AcidAMINO GROUP
Biological Unit 3 (3, 52)
No.NameCountTypeFull Name
1ACE6Mod. Amino AcidACETYL GROUP
2HYP42Mod. Amino Acid4-HYDROXYPROLINE
3NH24Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

(no "Site" information available for 3POD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3POD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3POD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3POD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3POD)

(-) Exons   (0, 0)

(no "Exon" information available for 3POD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:26
                                                         
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .......................... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3pod A  1 xGPpGPpGPpGKLGPpGPpGPpGPpx 26
                            |  |  | 10     |  20 |  ||
                            |  |  |  |     |  |  |  26-NH2
                            1-ACE |  |     |  |  |  | 
                               4-HYP |     |  |  |  | 
                                  7-HYP    |  |  |  | 
                                    10-HYP |  |  |  | 
                                          16-HYP |  | 
                                             19-HYP | 
                                                22-HYP
                                                   25-HYP


Chain B from PDB  Type:PROTEIN  Length:26
                                                         
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .......................... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3pod B  1 xGPpGPpGPpGKLGPpGPpGPpGPpx 26
                            |  |  | 10     |  20 |  ||
                            |  |  |  |     |  |  |  26-NH2
                            1-ACE |  |     |  |  |  | 
                               4-HYP |     |  |  |  | 
                                  7-HYP    |  |  |  | 
                                    10-HYP |  |  |  | 
                                          16-HYP |  | 
                                             19-HYP | 
                                                22-HYP
                                                   25-HYP


Chain C from PDB  Type:PROTEIN  Length:25
                                                        
               SCOP domains ------------------------- SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author ......................... Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                  3pod C  1 xGPpGPpGPpGKLGPpGPpGPpGPp 25
                            |  |  | 10     |  20 |  |
                            |  |  |  |     |  |  |  |
                            1-ACE |  |     |  |  |  |
                               4-HYP |     |  |  |  |
                                  7-HYP    |  |  |  |
                                    10-HYP |  |  |  |
                                          16-HYP |  |
                                             19-HYP |
                                                22-HYP
                                                   25-HYP
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3POD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3POD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3POD)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

3pob CRYSTAL STRUCTURE IN COMPLEX WITH MASP-1 CUB2