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(-) Description

Title :  CRYSTAL STRUCTURE OF SYMFOIL-4T PERMUTATION #2: DE NOVO DESIGNED BETA-TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE
 
Authors :  M. Blaber, J. Lee
Date :  11 Oct 10  (Deposition) - 12 Oct 11  (Release) - 12 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.32
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Trefoil, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Blaber, J. Lee
Permutations Study Of De Novo Designed Symmetric Beta-Trefoil Architecture
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DE NOVO DESIGNED BETA-TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE
    Chains: A
    Engineered: YES
    Other Details: CIRCULARLY PERMUTED SYNTHETIC SEQUENCE DERIVED FROM HUMAN ACIDIC FIBROBLAST GROWTH FACTOR WITH A SYMMETRIC DECONSTRUCTION METHOD. THE PROTEIN PRODUCED BY THIS SEQUENCE ADOPTS A BETA-TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:30 , VAL A:31 , THR A:72 , VAL A:73 , ARG A:78 , THR A:116 , VAL A:117 , HOH A:320 , HOH A:352 , HOH A:353BINDING SITE FOR RESIDUE TRS A 200
2AC2SOFTWAREARG A:110 , THR A:123 , ASP A:124 , HOH A:146 , HOH A:251 , HOH A:266BINDING SITE FOR RESIDUE SO4 A 228

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3P6I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3P6I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3P6I)

(-) Exons   (0, 0)

(no "Exon" information available for 3P6I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:127
                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....hhhh.eeeeee...eeeeee.....eeee.....eeee.........eeeeeee..eeeeee.....eeee.....eeee.........eeeee.....eeeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                3p6i A   10 KGGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINP  227
                            ||      36        46        56        66        76|       85        95       108       118|||    130       140|      220       
                            ||                                              76A                        103|         119||              140|                
                           10|                                                                          107          123|               211                
                            28                                                                                       123A
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3P6I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3P6I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3P6I)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

1jqz HUMAN ACIDIC FIBROBLAST GROWTH FACTOR. 141 AMINO ACID FORM WITH AMINO TERMINAL HIS TAG
3o4b CRYSTAL STRUCTURE OF SYMFOIL-4T: DE NOVO DESIGNED BETA- TREFOIL ARCHITECTURE WITH SYMMETRIC PRIMARY STRUCTURE
3p6j