3NRP - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF 'AS ISOLATED' UROPATHOGENIC E. COLI STRAIN F11 FETP RECOMBINANTLY EXPRESSED IN THE PERIPLASM OF E. COLI BL21(DE3)

Authors :   A. C. K. Chan, M. E. P. Murphy

Date :   30 Jun 10 (Deposition) - 18 May 11 (Release) - 10 Aug 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Immunoglobulin-Like Fold, Iron Transporter, Copper Binding, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Koch, A. C. Chan, M. E. Murphy, H. Lilie, G. Grass, D. H. Nies
Characterization Of A Dipartite Iron Uptake System From Uropathogenic Escherichia Coli Strain F11.
J. Biol. Chem. V. 286 25317 2011
PubMed-ID: 21596746 | Reference-DOI: 10.1074/JBC.M111.222745

Molecule 1 - PERIPLASMIC PROTEIN-PROBABLY INVOLVED IN HIGH-AFFINITY FE2+ TRANSPORT
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B(+)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 25-175
	Gene	:	ECF11_1994
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	340197
	Strain	:	F11

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3NRP)

(no "Site" information available for 3NRP)

(no "SS Bond" information available for 3NRP)

Asymmetric Unit

No.	Residues
1	Gly A:2	-	Phe A:3
2	Glu A:30	-	Pro A:31
3	Arg A:32	-	Gly A:33
4	Gly B:2	-	Phe B:3
5	Glu B:30	-	Pro B:31
6	Leu B:152	-	Asn B:153
7	Gly C:2	-	Phe C:3
8	Glu C:30	-	Pro C:31
9	Arg C:32	-	Gly C:33
10	Gly D:2	-	Phe D:3
11	Glu D:30	-	Pro D:31

(no "SAP(SNP)/Variant" information available for 3NRP)

(no "PROSITE Motif" information available for 3NRP)

(no "Exon" information available for 3NRP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee..eeeeeeee....ee......hhhhh.eeeeeeeee.................eeeeeeee.....eeeee.eeeee..eeeeeeee.....eeeeeeeeeehhhhhh.ee..............eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nrp A   2 GFKEYPAGEPVTMNEMELAAVYLQPIDMEPRGMGLPAAKADVHLEADIHAVEGNKNGFGAGEWIPYLTISYTLVNNDTGEKQEGTFMPMVASDGPHYGANIKMMGVGNYKVTYHIEPPSKAGMHRHTDSETGVGRWWKPFDVSYEFKYVGLN 153
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151

Chain B from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....eee..eeeeeeee...........hhhhh.eeeeeeeee.................eeeeeeee....eeeeee.eeeee..eeeeeeee.....eeeeeeeeeehhhhhh.eee.............eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nrp B   2 GFKEYPAGEPVTMNEMELAAVYLQPIDMEPRGGLPAAKADVHLEADIHAVEGNKNGFGAGEWIPYLTISYTLVNNDTGEKQEGTFMPMVASDGPHYGANIKMMGVGNYKVTYHIEPPSKAGMHRHTDSETGVGRWWKPFDVSYEFKYVGLN 153
                                    11        21        31 ||     42        52        62        72        82        92       102       112       122       132       142       152 
                                                          33|                                                                                                                      
                                                           35

Chain C from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....eee..eeeeeeee....ee......hhhhh.eeeeeeeee.................eeeeeeee.....eeeee.eeeee..eeeeeeee.....eeeeeeeeeehhhhhh.ee..............eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nrp C   2 GFKEYPAGEPVTMNEMELAAVYLQPIDMEPRGMGLPAAKADVHLEADIHAVEGNKNGFGAGEWIPYLTISYTLVNNDTGEKQEGTFMPMVASDGPHYGANIKMMGVGNYKVTYHIEPPSKAGMHRHTDSETGVGRWWKPFDVSYEFKYVGL 152
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151

Chain D from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee..eeeeeeee............hhhhh.eeeeeeeee.................eeeeeeee.....eeeee.eeeee..eeeeeeee.....eeeeeeeeee.......eee.............eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nrp D   2 GFKEYPAGEPVTMNEMELAAVYLQPIDMEPRGMGLPAAKADVHLEADIHAVEGNKNGFGAGEWIPYLTISYTLVNNDTGEKQEGTFMPMVASDGPHYGANIKMMGVGNYKVTYHIEPPSKAGMHRHTDSETGVGRWWKPFDVSYEFKYVGL 152
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3NRP)

(no "CATH Domain" information available for 3NRP)

(no "Pfam Domain" information available for 3NRP)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3NRP)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3nrp)

	Sites
(no "Sites" information available for 3nrp)

	Cis Peptide Bonds
		Arg A:32 - Gly A:33	[ RasMol ]
		Arg C:32 - Gly C:33	[ RasMol ]
		Glu A:30 - Pro A:31	[ RasMol ]
		Glu B:30 - Pro B:31	[ RasMol ]
		Glu C:30 - Pro C:31	[ RasMol ]
		Glu D:30 - Pro D:31	[ RasMol ]
		Gly A:2 - Phe A:3	[ RasMol ]
		Gly B:2 - Phe B:3	[ RasMol ]
		Gly C:2 - Phe C:3	[ RasMol ]
		Gly D:2 - Phe D:3	[ RasMol ]
		Leu B:152 - Asn B:153	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (0, 0)

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Cis Peptide Bonds (11, 11)

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