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(-) Description

Title :  INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX
 
Authors :  H. Ohishi, N. Terasoma, I. Nakanishi, G. Van Der Marel, J. H. Van Boom, A. Rich, A. H. -J. Wang, T. Hakoshima, K. -I. Tomita
Date :  24 Jun 97  (Deposition) - 10 Apr 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Z-Dna, Double Helix (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ohishi, N. Terasoma, I. Nakanishi, G. Van Der Marel, J. H. Van Boom, A. Rich, A. H. Wang, T. Hakoshima, K. Tomita
Interaction Between Left-Handed Z-Dna And Polyamine - 3. The Crystal Structure Of The D(Cg)3 And Thermospermine Complex.
Febs Lett. V. 398 291 1996
PubMed-ID: 8977125  |  Reference-DOI: 10.1016/S0014-5793(96)01225-2
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION
2TER2Ligand/IonN-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:3 , DG A:4 , DC A:5 , DG A:6 , HOH A:31 , HOH A:35 , HOH A:43 , HOH A:52 , HOH A:74 , HOH A:76 , DG B:8 , DC B:9 , DG B:10 , HOH B:44BINDING SITE FOR RESIDUE TER A 13
2AC2SOFTWAREDC A:3 , DG A:4 , HOH A:31 , HOH A:32 , HOH A:66 , DC B:7 , DG B:8 , DG B:12 , HOH B:58BINDING SITE FOR RESIDUE TER A 14
3AC3SOFTWAREDG A:6 , HOH A:81 , HOH A:83 , HOH A:85 , MG B:16 , HOH B:73 , HOH B:80 , HOH B:82 , HOH B:84BINDING SITE FOR RESIDUE MG B 15
4AC4SOFTWAREHOH A:83 , HOH A:85 , DG B:10 , MG B:15 , HOH B:84 , HOH B:86 , HOH B:87 , HOH B:88BINDING SITE FOR RESIDUE MG B 16

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 336D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 336D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 336D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 336D)

(-) Exons   (0, 0)

(no "Exon" information available for 336D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:6
                                     
                  336d A  1 CGCGCG  6


Chain B from PDB  Type:DNA  Length:6
                                     
                  336d B  7 CGCGCG 12
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 336D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 336D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 336D)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 336D)

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  Cis Peptide Bonds
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  336d
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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