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(-) Description

Title :  CRYSTAL STRUCTURE OF TTMA177, A HYPOTHETICAL PROTEIN FROM THERMUS THERMOPHILUS PHAGE TMA
 
Authors :  Y. Agari, M. Tamakoshi, A. Yamagishi, A. Shinkai, A. Ebihara, S. Yokoyama, S. Kuramitsu, T. Oshima, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  26 Nov 07  (Deposition) - 02 Dec 08  (Release) - 02 Dec 08  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Alpha And Beta Proteins (A+B), Cystatin-Like, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Agari, M. Tamakoshi, A. Yamagishi, A. Shinkai, A. Ebihara, S. Yokoyama, S. Kuramitsu, T. Oshima
Crystal Structure Of Ttma177, A Hypothetical Protein From Thermus Thermophilus Phage Tma
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TTMA177
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A(+)
    Expression System Strain: ROSETTA2 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-69
    Organism Scientific: THERMUS THERMOPHILUS PHAGE TMA
    Organism Taxid: 32644

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2ZDJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZDJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ZDJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZDJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZDJ)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZDJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:69
 aligned with D0VWQ2_9ZZZZ | D0VWQ2 from UniProtKB/TrEMBL  Length:69

    Alignment length:69
                                    10        20        30        40        50        60         
          D0VWQ2_9ZZZZ    1 MKMRKLVKDFGDDYTLIQDSQEVKAILEYIGSEEEPHALFVKVGDGDYEEVWGIDSFVPYNFLEAYRLK 69
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhh....eee.hhhhhhhhhhhhh......eeeeeee..eeeeeeee.........eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2zdj A  1 mKmRKLVKDFGDDYTLIQDSQEVKAILEYIGSEEEPHALFVKVGDGDYEEVWGIDSFVPYNFLEAYRLK 69
                            | |     10        20        30        40        50        60         
                            | |                                                                  
                            1-MSE                                                                
                              3-MSE                                                              


Chain B from PDB  Type:PROTEIN  Length:69
 aligned with D0VWQ2_9ZZZZ | D0VWQ2 from UniProtKB/TrEMBL  Length:69

    Alignment length:69
                                    10        20        30        40        50        60         
          D0VWQ2_9ZZZZ    1 MKMRKLVKDFGDDYTLIQDSQEVKAILEYIGSEEEPHALFVKVGDGDYEEVWGIDSFVPYNFLEAYRLK 69
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhh....eee.hhhhhhhhhhhh.......eeeeeee..eeeeeeee.........eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2zdj B  1 mKmRKLVKDFGDDYTLIQDSQEVKAILEYIGSEEEPHALFVKVGDGDYEEVWGIDSFVPYNFLEAYRLK 69
                            | |     10        20        30        40        50        60         
                            1-MSE                                                                
                              3-MSE                                                              


Chain C from PDB  Type:PROTEIN  Length:69
 aligned with D0VWQ2_9ZZZZ | D0VWQ2 from UniProtKB/TrEMBL  Length:69

    Alignment length:69
                                    10        20        30        40        50        60         
          D0VWQ2_9ZZZZ    1 MKMRKLVKDFGDDYTLIQDSQEVKAILEYIGSEEEPHALFVKVGDGDYEEVWGIDSFVPYNFLEAYRLK 69
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhh....eee.hhhhhhhhhhhh.......eeeeeee..eeeeeeee.........eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2zdj C  1 mKmRKLVKDFGDDYTLIQDSQEVKAILEYIGSEEEPHALFVKVGDGDYEEVWGIDSFVPYNFLEAYRLK 69
                            | |     10        20        30        40        50        60         
                            1-MSE                                                                
                              3-MSE                                                              


Chain D from PDB  Type:PROTEIN  Length:69
 aligned with D0VWQ2_9ZZZZ | D0VWQ2 from UniProtKB/TrEMBL  Length:69

    Alignment length:69
                                    10        20        30        40        50        60         
          D0VWQ2_9ZZZZ    1 MKMRKLVKDFGDDYTLIQDSQEVKAILEYIGSEEEPHALFVKVGDGDYEEVWGIDSFVPYNFLEAYRLK 69
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.hhh....eee.hhhhhhhhhhhh.......eeeeeee..eeeeeeee.........eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2zdj D  1 mKmRKLVKDFGDDYTLIQDSQEVKAILEYIGSEEEPHALFVKVGDGDYEEVWGIDSFVPYNFLEAYRLK 69
                            | |     10        20        30        40        50        60         
                            1-MSE                                                                
                              3-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZDJ)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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