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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GNA 3'-CTC(BR)UAGAG-2'
 
Authors :  M. K. Schlegel, L. -O. Essen, E. Meggers
Date :  16 Apr 10  (Deposition) - 04 May 11  (Release) - 12 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Rna, Watson-Crick Base Pair, Glycol Nucleic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. T. Johnson, M. K. Schlegel, E. Meggers, L. O. Essen, O. Wiest
On The Structure And Dynamics Of Duplex Gna.
J. Org. Chem. V. 76 7964 2011
PubMed-ID: 21838272  |  Reference-DOI: 10.1021/JO201469B
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GNA
    Chains: A
    Organism Taxid: 32630
    Other Details: SYNTHETIC GLYCOL NUCLEIC ACID 3'-((ZCY)P(ZTH)P(ZCY)P(ZBU)P(ZAD)P(ZGU)P(ZAD)P(ZGU))-2'
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 10)

Asymmetric Unit (6, 10)
No.NameCountTypeFull Name
1NA2Ligand/IonSODIUM ION
2ZAD2Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-ADENINE
3ZBU1Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-5-BROMO-URACIL
4ZCY2Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-CYTOSINE
5ZGU2Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-GUANINE
6ZTH1Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-THYMINE
Biological Unit 1 (5, 16)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2ZAD4Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-ADENINE
3ZBU2Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-5-BROMO-URACIL
4ZCY4Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-CYTOSINE
5ZGU4Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-GUANINE
6ZTH2Mod. Nucleotide(S)-1'-(2',3'-DIHYDROXYPROPYL)-THYMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREZBU A:4BINDING SITE FOR RESIDUE NA A1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XC6)

(-) Cis Peptide Bonds  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:8
                                      
                   2xc6 A 1 cucuagag 8
                            ||||||||
                            ||||||||
                            1-ZCY|||
                             2-ZTH||
                              3-ZCY|
                               4-ZBU
                                5-ZAD
                                 6-ZGU
                                  7-ZAD
                                   8-ZGU
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XC6)

(-) CATH Domains  (0, 0)

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