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(-) Description

Title :  STRUCTURE OF METALLO-DNA IN SOLUTION
 
Authors :  H. Yamaguchi, J. Sebera, J. Kondo, S. Oda, T. Komuro, T. Kawamura, T. Dai Y. Kondo, I. Okamoto, A. Ono, J. V. Burda, C. Kojima, V. Sychrovsky, Y. T
Date :  18 Jun 13  (Deposition) - 05 Mar 14  (Release) - 05 Mar 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (17x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna, Metallo-Base-Pair, T-Hg(Ii)-T Base-Pair (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yamaguchi, J. Sebera, J. Kondo, S. Oda, T. Komuro, T. Kawamura, T. Dairaku, Y. Kondo, I. Okamoto, A. Ono, J. V. Burda, C. Kojima, V. Sychrovsky, Y. Tanaka
The Structure Of Metallo-Dna With Consecutive Thymine-Hgii-Thymine Base Pairs Explains Positive Entropy For The Metallo Base Pair Formation.
Nucleic Acids Res. 2013
PubMed-ID: 24371287  |  Reference-DOI: 10.1093/NAR/GKT1344

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (17x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1HG2Ligand/IonMERCURY (II) ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT A:5 , DT B:16BINDING SITE FOR RESIDUE HG A 101
2AC2SOFTWAREDT A:6 , DT B:15BINDING SITE FOR RESIDUE HG A 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RT8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RT8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RT8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RT8)

(-) Exons   (0, 0)

(no "Exon" information available for 2RT8)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:10
                                         
                  2rt8 A  1 CGCGTTGTCC 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  2rt8 B 11 GGACTTCGCG 20
                                    20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RT8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2RT8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2RT8)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2RT8)

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  2rt8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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