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(-) Description

Title :  DNA OLIGOMER CONTAINING PROPYLENE CROSS-LINKED CYCLIC 2'-DEOXYURIDYLATE DIMER
 
Authors :  K. Furuita, S. Murata, J. G. Jee, S. Ichikawa, A. Matsuda, C. Kojima
Date :  24 Mar 11  (Deposition) - 08 Jun 11  (Release) - 08 Jun 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna, Nucleic Acid, Deoxyuridylate, Bent Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Furuita, S. Murata, J. G. Jee, S. Ichikawa, A. Matsuda, C. Kojima
Structural Feature Of Bent Dna Recognized By Hmgb1
J. Am. Chem. Soc. V. 133 5788 2011
PubMed-ID: 21443191  |  Reference-DOI: 10.1021/JA2013399

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*CP*TP*TP*CP*AP*(JDT)P*TP*AP*CP*AP*TP*CP*C)- 3')
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*GP*GP*AP*TP*GP*TP*AP*AP*TP*GP*AP*AP*GP*G)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1JDT1Mod. Nucleotide2'-DEOXY-5-ETHYLURIDINE 5'-(DIHYDROGEN PHOSPHATE)
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1JDT1Mod. Nucleotide2'-DEOXY-5-ETHYLURIDINE 5'-(DIHYDROGEN PHOSPHATE)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:14
                                             
                  2rrq A  1 CCTTCAtTACATCC 14
                                  | 10    
                                  7-JDT   


Chain B from PDB  Type:DNA  Length:14
                                             
                  2rrq B 15 GGATGTAATGAAGG 28
                                    24
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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2rrr