2RN1 - JenaLib

Title :   LIQUID CRYSTAL SOLUTION STRUCTURE OF THE KISSING COMPLEX FORMED BY THE APICAL LOOP OF THE HIV TAR RNA AND A HIGH AFFINITY RNA APTAMER OPTIMIZED BY SELEX

Authors :   H. Van Melckebeke, M. Devany, C. Di Primo, F. Beaurain, J. Toulme, D. L. Bryce, J. Boisbouvier

Date :   05 Dec 07 (Deposition) - 23 Sep 08 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (17x)

Keywords :   Rna Kissing Complex, Hiv Tar, High Affinity Rna Aptamer Selected By Selex, Liquid Crystal Nmr, Ga Base Pair (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Van Melckebeke, M. Devany, C. Di Primo, F. Beaurain, D. L. Bryce, J. Boisbouvier
Liquid-Crystal Nmr Structure Of Hiv Tar Rna Bound To Its Selex Rna Aptamer Reveals The Origins Of The High Stability Of The Complex
Proc. Natl. Acad. Sci. Usa V. 105 9210 2008
PubMed-ID: 18607001 | Reference-DOI: 10.1073/PNAS.0712121105
(for further references see the PDB file header)

Compounds

*Molecule 1 - RNA (5'- R(PGPAPGPCPCPCPUPGPGPGPAPGPGPCPUPC)-3')*
	Chains	:	A
	Engineered	:	YES
	Other Details	:	NUCLEOTIDE SYNTHESIS
	Synonym	:	TAR
	Synthetic	:	YES

*Molecule 2 - RNA (5'- R(PGPCPUPGPGPUPCPCPCPAPGPAPCPAPGPC)-3')*
	Chains	:	B
	Engineered	:	YES
	Other Details	:	NUCLEOTIDE SYNTHESIS
	Synonym	:	TAR*GA
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:RNA  Length:16
                                               
                  2rn1 A  1 GAGCCCUGGGAGGCUC 16
                                    10

Chain B from PDB  Type:RNA  Length:16
                                               
                  2rn1 B 17 GCUGGUCCCAGACAGC 32
                                    26

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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