2PWT - JenaLib

Title :   CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECODING SITE COMPLEXED WITH AMINOGLYCOSIDE CONTAINING THE L-HABA GROUP

Authors :   J. Kondo, K. Pachamuthu, B. Francois, J. Szychowski, S. Hanessian, E. Westhof

Date :   13 May 07 (Deposition) - 18 Sep 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Aminoglycoside; Haba Group; Ribosomal Decoding Site; X-Ray Analysis; Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Kondo, K. Pachamuthu, B. Francois, J. Szychowski, S. Hanessian, E. Westhof
Crystal Structure Of The Bacterial Ribosomal Decoding Site Complexed With A Synthetic Doubly Functionalized Paromomycin Derivative: A New Specific Binding Mode To An A-Minor Motif Enhances In Vitro Antibacterial Activity
Chemmedchem V. 2 1631 2007
PubMed-ID: 17722211 | Reference-DOI: 10.1002/CMDC.200700113
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	G A:2 , C A:3 , U A:5 , C A:6 , A A:7 , HOH A:165 , G B:35 , U B:36 , G B:37 , A B:38 , A B:39 , G B:40 , U B:41 , C B:42 , G B:43 , HOH B:103 , HOH B:110 , HOH B:118 , HOH B:139 , HOH B:164 , HOH B:180 , HOH B:183 , HOH B:209 , HOH B:249 , HOH B:290	BINDING SITE FOR RESIDUE LHA B 50
2	AC2	SOFTWARE	G A:13 , U A:14 , G A:15 , A A:16 , A A:17 , G A:18 , U A:19 , C A:20 , G A:21 , C A:22 , HOH A:101 , HOH A:105 , HOH A:111 , HOH A:123 , HOH A:153 , HOH A:167 , HOH A:168 , HOH A:170 , HOH A:191 , HOH A:200 , HOH A:223 , HOH A:301 , U B:27 , C B:28 , A B:29 , LHA B:55 , HOH B:194 , HOH B:196	BINDING SITE FOR RESIDUE LHA A 51
3	AC3	SOFTWARE	G A:12 , A A:16 , C A:20 , G A:21 , LHA A:51 , HOH A:144 , HOH A:185 , HOH A:191 , G B:34 , G B:35 , A B:38 , A B:39 , U B:41 , C B:42 , G B:43 , C B:44 , HOH B:125 , HOH B:133 , HOH B:148 , HOH B:157 , HOH B:169 , HOH B:177 , HOH B:192 , HOH B:193 , HOH B:194 , HOH B:254 , HOH B:278	BINDING SITE FOR RESIDUE LHA B 55

SS Bonds (0, 0)

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Sequence-Structure Mapping

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Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:21
                                                    
                  2pwt A  2 GCGUCACACCGGUGAAGUCGC 22
                                    11        21

Chain B from PDB  Type:RNA  Length:21
                                                    
                  2pwt B 24 GCGUCACACCGGUGAAGUCGC 44
                                    33        43

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Classification and Annotation

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