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(-) Description

Title :  D(GTATACC) UNDER HYDROSTATIC PRESSURE OF 1.04 GPA
 
Authors :  T. Prange, E. Girard, R. Fourme, R. Kahn
Date :  19 Apr 07  (Deposition) - 24 Jul 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna, High-Pressure, Crystal Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Girard, T. Prange, A. C. Dhaussy, E. Migianu-Griffoni, M. Lecouvey, J. C. Chervin, M. Mezouar, R. Kahn, R. Fourme
Adaptation Of The Base-Paired Double-Helix Molecular Architecture To Extreme Pressure.
Nucleic Acids Res. V. 35 4800 2007
PubMed-ID: 17617642  |  Reference-DOI: 10.1093/NAR/GKM511
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3'
    Chains: A, B
    Engineered: YES
    Other Details: SYNTHETIC DNA OCTAMER
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SPM1Ligand/IonSPERMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT B:15 , DA B:16BINDING SITE FOR RESIDUE SPM B 20

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PL8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2PL8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PL8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PL8)

(-) Exons   (0, 0)

(no "Exon" information available for 2PL8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:8
                                       
                  2pl8 A  1 GGTATACC  8


Chain B from PDB  Type:DNA  Length:8
                                       
                  2pl8 B 11 GGTATACC 18
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2PL8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2PL8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2PL8)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  2pl8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

115d D-(GG[BR]UA[BR]UACC), WITH THE TWO BR REPLACING THY METHYL GROUPS
1vj4 D-(GGTATACC) INITIAL STRUCTURE
2pkv D-(GGTATACC) AMBIENT PRESSURE
2pl4 D-(GGTATACC) UNDER 0.55 GPA HYDROSTATIC PRESSURE
2plb D-(GGTATACC) AT 1.39 GPA HYDROSTATIC PRESSURE
2plo D-(GTATACC) LOW TEMPERATURE (100K)