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(-) Description

Title :  DIRECTING MACROMOLECULAR CONFORMATION THROUGH HALOGEN BONDS
 
Authors :  A. R. Voth, F. A. Hays, P. S. Ho
Date :  02 Feb 07  (Deposition) - 27 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Dna Holliday Junction, Halogen Bond (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Voth, F. A. Hays, P. S. Ho
Directing Macromolecular Conformation Through Halogen Bonds.
Proc. Natl. Acad. Sci. Usa V. 104 6188 2007
PubMed-ID: 17379665  |  Reference-DOI: 10.1073/PNAS.0610531104
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3')
    Chains: A
    Engineered: YES
    Other Details: SYNTHETICALLY PREPARED DECANUCLEOTIDE SEQUENCES.
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*CP*CP*GP*GP*TP*AP*(DU)P*CP*GP*G)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1DU1Mod. Residue
2NA2Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1DU-1Mod. Residue
2NA-1Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH B:21 , HOH B:22 , HOH B:26 , HOH B:30 , HOH B:43BINDING SITE FOR RESIDUE NA B 28
2AC2SOFTWAREDA A:6BINDING SITE FOR RESIDUE NA A 63

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ORH)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:10
                                         
                  2orh A  1 CCGATACCGG 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  2orh B 11 CCGGTAxCGG 20
                                  | 20
                                 17-DU
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ORH)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

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2orf 2org