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(-) Description

Title :  SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING THE UNIVERSAL BASE 5-NITROINDOLE-3-CARBOXAMIDE
 
Authors :  J. Gallego, D. Loakes
Date :  05 Dec 06  (Deposition) - 24 Apr 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (28x)
Keywords :  Dna Universal Base Nitroindole Intercalation Dynamics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Gallego, D. Loakes
Solution Structure And Dynamics Of Dna Duplexes Containing The Universal Base Analogues 5-Nitroindole And 5-Nitroindole 3-Carboxamide.
Nucleic Acids Res. V. 35 2904 2007
PubMed-ID: 17438041  |  Reference-DOI: 10.1093/NAR/GKM074
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*TP*AP*CP*(NCX)P*AP*CP*G)-3')
    Chains: A
    Engineered: YES
    Other Details: SYNTHESIZED BY SOLID PHASE METHODS USING 5- NITROINDOLE-3-CARBOXAMIDE PHOSPHORAMIDITE
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*CP*GP*TP*TP*GP*TP*AP*C)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (28x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1NCX1Mod. Nucleotide1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-5-NITRO-1H-INDOLE-3-CARBOXAMIDE

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:8
                                       
                  2o4y A  1 GTACxACG  8
                                |   
                                |   
                                5-NCX


Chain B from PDB  Type:DNA  Length:8
                                       
                  2o4y B  9 CGTTGTAC 16
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