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(-) Description

Title :  RH(BPY)2CHRYSI COMPLEXED TO MISMATCHED DNA
 
Authors :  V. C. Pierre, J. T. Kaiser, J. K. Barton
Date :  28 Nov 06  (Deposition) - 09 Jan 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Dna Mismatch, Metallointercalator, Dna Recognition (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. C. Pierre, J. T. Kaiser, J. K. Barton
Insights Into Finding A Mismatch Through The Structure Of A Mispaired Dna Bound By A Rhodium Intercalator.
Proc. Natl. Acad. Sci. Usa V. 104 429 2007
PubMed-ID: 17194756  |  Reference-DOI: 10.1073/PNAS.0610170104
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*CP*CP*CP*G)-3'
    Chains: A
    Engineered: YES
    Other Details: SOLID PHASE SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1R1C3Ligand/IonBIS(2,2'-BIPYRIDINE-KAPPA~2~N~1~,N~1'~)[CHRYSENE-5,6-DIIMINATO(2-)-KAPPA~2~N,N']RHODIUM(4+)
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1R1C6Ligand/IonBIS(2,2'-BIPYRIDINE-KAPPA~2~N~1~,N~1'~)[CHRYSENE-5,6-DIIMINATO(2-)-KAPPA~2~N,N']RHODIUM(4+)

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:1 , DA A:5 , DA A:6 , DT A:7 , DG A:12 , HOH A:2047BINDING SITE FOR RESIDUE R1C A 1001
2AC2SOFTWAREDC A:1 , DA A:5 , DA A:6 , DT A:7 , DG A:12 , HOH A:2017 , HOH A:2047BINDING SITE FOR RESIDUE R1C A 2011
3AC3SOFTWAREDG A:3 , DA A:4 , DA A:5 , DT A:8 , DC A:9 , DC A:10 , DC A:11 , HOH A:2065BINDING SITE FOR RESIDUE R1C A 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2O1I)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:DNA  Length:12
                                           
                  2o1i A  1 CGGAAATTCCCG 12
                                    10
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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