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(-) Description

Title :  PEPTIDE MODEL OF 4-STRANDED BETA-ARCH
 
Authors :  V. M. Kung
Date :  05 Mar 16  (Deposition) - 08 Mar 17  (Release) - 08 Mar 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Kung
A Designed Peptide Model Of Early-Stage Amyloid Structures
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DESIGNED BETA-ARCH
    Chains: A
    Engineered: YES
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 7)

NMR Structure (6, 7)
No.NameCountTypeFull Name
14FU1Mod. Amino Acid(1R,2S)-CYCLOHEXANE-1,2-DICARBOXYLIC ACID
24G61Mod. Amino Acid2-METHYLPROPANE-1,2-DIAMINE
3ACE1Mod. Amino AcidACETYL GROUP
4DAL2Mod. Amino AcidD-ALANINE
5DPR1Mod. Amino AcidD-PROLINE
6NH21Mod. Amino AcidAMINO GROUP
NMR Structure * (6, 7)
No.NameCountTypeFull Name
14FU1Mod. Amino Acid(1R,2S)-CYCLOHEXANE-1,2-DICARBOXYLIC ACID
24G61Mod. Amino Acid2-METHYLPROPANE-1,2-DIAMINE
3ACE1Mod. Amino AcidACETYL GROUP
4DAL2Mod. Amino AcidD-ALANINE
5DPR1Mod. Amino AcidD-PROLINE
6NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

(no "Site" information available for 2NBL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NBL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2NBL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NBL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NBL)

(-) Exons   (0, 0)

(no "Exon" information available for 2NBL)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author ............................... Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  2nbl A  0 xTEIRVxGVTIRMRxSHxFWVQVxxKEFKHx 30
                            |     |  9    |  |19   ||   29|
                            |     6-4FU  14-DAL    ||     |
                            0-NH2           17-DAL ||     |
                                                  23-DPR  |
                                                   24-4G6 |
                                                         30-ACE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2NBL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2NBL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2NBL)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2NBL)

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  2nbl
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