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(-) Description

Title :  SOLUTION NMR-STRUCTURE OF THE NEOMYCIN SENSING RIBOSWITCH RNA BOUND TO PAROMOMYCIN
 
Authors :  S. Schmidtke, E. Duchardt-Ferner, O. Ohlenschlaeger, D. Gottstein, J
Date :  14 Jan 15  (Deposition) - 09 Dec 15  (Release) - 03 Feb 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Rna, Riboswitch, Aminoglycoside (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Duchardt-Ferner, S. R. Gottstein-Schmidtke, J. E. Weigand, O. Ohlenschlager, J. P. Wurm, C. Hammann, B. Suess, J. Wohnert
What A Difference An Oh Makes: Conformational Dynamics As The Basis For The Ligand Specificity Of The Neomycin-Sensin Riboswitch.
Angew. Chem. Int. Ed. Engl. V. 55 1527 2016
PubMed-ID: 26661511  |  Reference-DOI: 10.1002/ANIE.201507365

(-) Compounds

Molecule 1 - RNA (27-MER)
    ChainsA
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1PAR1Ligand/IonPAROMOMYCIN
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1PAR1Ligand/IonPAROMOMYCIN

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREU A:4 , G A:5 , C A:6 , G A:9 , U A:10 , C A:11 , C A:12 , A A:17 , U A:18 , G A:19 , G A:20 , U A:21 , C A:22BINDING SITE FOR RESIDUE PAR A 101

(-) SS Bonds  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:27
                                                          
                  2mxs A  1 GGCUGCUUGUCCUUUAAUGGUCCAGUC 27
                                    10        20       

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 Classification and Annotation

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

2kxm RELATED ID: 25427 RELATED DB: BMRB