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(-) Description

Title :  G-TRIPLEX STRUCTURE AND FORMATION PROPENSITY
 
Authors :  L. Cerofolini, M. Fragai, A. Giachetti, V. Limongelli, C. Luchinat, E. Novellino, M. Parrinello, A. Randazzo
Date :  11 Feb 14  (Deposition) - 19 Nov 14  (Release) - 10 Dec 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  G-Triplex, G-Triad, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Cerofolini, J. Amato, A. Giachetti, V. Limongelli, E. Novellino, M. Parrinello, M. Fragai, A. Randazzo, C. Luchinat
G-Triplex Structure And Formation Propensity.
Nucleic Acids Res. V. 42 13393 2014
PubMed-ID: 25378342  |  Reference-DOI: 10.1093/NAR/GKU1084

(-) Compounds

Molecule 1 - DNA_(5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*G)-3')
    ChainsA
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1K1Ligand/IonPOTASSIUM ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:1 , DG A:2 , DG A:5 , DG A:6 , DG A:10 , DG A:11BINDING SITE FOR RESIDUE K A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MKO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MKO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2MKO)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:11
                                          
                  2mko A  1 GGTTGGTGTGG 11
                                    10 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MKO)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2mkm RELATED ID: 19784 RELATED DB: BMRB