2MCJ - JenaLib

Title :   NMR STRUCTURE OF SPERMINE MODIFIED DNA DUPLEX

Authors :   J. Brzezinska, Z. Gdaniec, L. Popenda, W. T. Markiewicz

Date :   20 Aug 13 (Deposition) - 22 Jan 14 (Release) - 22 Jan 14 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (10x)
NMR Structure *: A,B  (1x)

Keywords :   Dna, Nucelic Acid, Poliamine, Spermine, Poliaminooligonucleotide, Dna Duplex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Brzezinska, Z. Gdaniec, L. Popenda, W. T. Markiewicz
Polyaminooligonucleotide: Nmr Structure Of Duplex Dna Containing A Nucleoside With Spermine Residue, N-[4, 9, 13-Triazatridecan-1-Yl]-2'-Deoxycytidine.
Biochim. Biophys. Acta V. 1840 1163 2014
PubMed-ID: 24361616 | Reference-DOI: 10.1016/J.BBAGEN.2013.12.008

Compounds

*Molecule 1 - DNA_(5'-D(GPTPCPGPGPCPTPG)-3')*
	Chains	:	A
	Engineered	:	YES
	Other Details	:	SYNTHESIZED USING PHOSPHORAMIDITE CHEMISTRY
	Synthetic	:	YES

*Molecule 2 - DNA_(5'-D(CPAPGP(N4S)PCPGPAPC)-3')*
	Chains	:	B
	Engineered	:	YES
	Other Details	:	SYNTHESIZED USING PHOSPHORAMIDITE CHEMISTRY
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

NMR Structure (1, 1)

No.	Name	Count	Type	Full Name
1	N4S	1	Mod. Nucleotide	N-[3-({4-[(3-AMINOPROPYL)AMINO]BUTYL}AMINO)PROPYL]-2'-DEOXYCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)

NMR Structure * (1, 1)

No.	Name	Count	Type	Full Name
1	N4S	1	Mod. Nucleotide	N-[3-({4-[(3-AMINOPROPYL)AMINO]BUTYL}AMINO)PROPYL]-2'-DEOXYCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)

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SS Bonds (0, 0)

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Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA  Length:8
                                      
                   2mcj A 1 GTCGGCTG 8

Chain B from PDB  Type:DNA  Length:8
                                      
                   2mcj B 1 CAGxCGAC 8
                               |    
                               4-N4S

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Classification and Annotation

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