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(-) Description

Title :  DNA DUPLEX CONTAINING MISPAIR-ALIGNED O6G-HEPTYLENE-O6G INTERSTRAND CROSS-LINK
 
Authors :  A. Y. Denisov, F. P. Mcmanus, A. M. Noronha, C. J. Wilds
Date :  11 Oct 12  (Deposition) - 16 Oct 13  (Release) - 16 Oct 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (11x)
NMR Structure *:  A,B  (1x)
Keywords :  Interstrand Cross-Link, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Y. Denisov, F. P. Mcmanus, D. K. O'Flaherty, A. M. Noronha, C. J. Wild
Solution Structures Of Dna Duplexes Containing Mispair-Aligned O4U-Heptylene-O4U And O6G-Heptylene-O6G Interstrand Cross-Links
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (11x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1HP61Ligand/IonHEPTANE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1HP61Ligand/IonHEPTANE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:6 , DG B:6BINDING SITE FOR RESIDUE HP6 B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LZW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LZW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2LZW)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:11
                                          
                  2lzw A  1 CGAAAGTTTCG 11
                                    10 


Chain B from PDB  Type:DNA  Length:11
                                          
                  2lzw B  1 CGAAAGTTTCG 11
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LZW)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  2lzw
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1n4b
1s37
1xci
2lzv RELATED ID: 18781 RELATED DB: BMRB