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(-) Description

Title :  SOLUTION STRUCTURE OF DUPLEX DNA CONTAINING A B-CARBA-FAPY-DG LESION
 
Authors :  T. Zalianyak, C. De Los Santos, M. Lukin, S. Attaluri, F. Johnson
Date :  03 Aug 12  (Deposition) - 20 Feb 13  (Release) - 20 Feb 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  B,D  (7x)
NMR Structure *:  B,D  (1x)
Keywords :  Oxidative Damage, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Lukin, T. Zaliznyak, S. Attaluri, F. Johnson, C. De Los Santos
Solution Structure Of Duplex Dna Containing A B-Carba-Fapy-Dg Lesion
Chem. Res. Toxicol. V. 25 2423 2012
PubMed-ID: 22897814  |  Reference-DOI: 10.1021/TX300290B

(-) Compounds

Molecule 1 - DNA (5'-D(*G*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3')
    Chains: D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (7x): BD
NMR Structure * (1x): BD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1LWM1Mod. Nucleotide[(1R,2S,4R)-4-{[2-AMINO-5-(FORMYLAMINO)-6-OXO-1,6-DIHYDROPYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL]METHYL DIHYDROGEN PHOSPHATE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1LWM1Mod. Nucleotide[(1R,2S,4R)-4-{[2-AMINO-5-(FORMYLAMINO)-6-OXO-1,6-DIHYDROPYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL]METHYL DIHYDROGEN PHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 2LWO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LWO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LWO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LWO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LWO)

(-) Exons   (0, 0)

(no "Exon" information available for 2LWO)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain B from PDB  Type:DNA  Length:11
                                          
                  2lwo B  1 CGTACxCATGC 11
                                 |  10 
                                 6-LWM 


Chain D from PDB  Type:DNA  Length:11
                                          
                  2lwo D  1 GCATGCGTACG 11
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LWO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LWO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LWO)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  2lwo
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 Related Entries

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(-) Related Entries Specified in the PDB File

2lwm 2lwn