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(-) Description

Title :  NMR STRUCTURE OF THE SELF-COMPLEMENTARY 10 MER DNA DUPLEX 5'-GGATATATCC-3' IN COMPLEX WITH NETROPSIN
 
Authors :  M. Rettig, M. W. Germann, W. Wilson, S. Wang
Date :  31 Jul 12  (Deposition) - 23 Jan 13  (Release) - 20 Feb 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  1,2  (11x)
NMR Structure *:  1,2  (1x)
Keywords :  Microstructure, Induced Dna Binding, Dna Minor Groove Variations, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Rettig, M. W. Germann, S. Wang, W. D. Wilson
Molecular Basis For Sequence-Dependent Induced Dna Bending.
Chembiochem V. 14 323 2013
PubMed-ID: 23355266  |  Reference-DOI: 10.1002/CBIC.201200706

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3')
    Chains: 1, 2
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (11x): 12
NMR Structure * (1x): 12

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1NT1Ligand/IonNETROPSIN
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1NT-1Ligand/IonNETROPSIN

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT 1:4 , DA 1:5 , DT 1:6 , DA 1:7 , DT 1:8 , DC 1:9 , DT 2:14 , DA 2:15 , DT 2:16 , DA 2:17 , DT 2:18 , DC 2:19BINDING SITE FOR RESIDUE NT 1 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LWH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LWH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LWH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LWH)

(-) Exons   (0, 0)

(no "Exon" information available for 2LWH)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:DNA  Length:10
                                         
                  2lwh 1  1 GGATATATCC 10
                                    10


Chain 2 from PDB  Type:DNA  Length:10
                                         
                  2lwh 2 11 GGATATATCC 20
                                    20
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LWH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LWH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LWH)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  2lwh
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2lwg THE FREE DNA WITHOUT NETROPSIN. RELATED ID: 18626 RELATED DB: BMRB