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(-) Description

Title :  SOLUTION STRUCTURE OF A PARALLEL-STRANDED OLIGOISOGUANINE DNA PENTAPLEX FORMED BY D(T(IG)4T) IN THE PRESENCE OF CS IONS
 
Authors :  M. Kang, B. Heuberger, J. C. Chaput, C. Switzer, J. Feigon
Date :  14 Jun 12  (Deposition) - 25 Jul 12  (Release) - 23 Nov 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C,D,E  (16x)
NMR Structure *:  A,B,C,D,E  (1x)
Keywords :  Pentaplex, Isoguanine, Parallel-Stranded, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kang, B. Heuberger, J. C. Chaput, C. Switzer, J. Feigon
Solution Structure Of A Parallel-Stranded Oligoisoguanine Dna Pentaplex Formed By D(T(Ig)4T) In The Presence Of Cs(+) Ions.
Angew. Chem. Int. Ed. Engl. V. 51 7952 2012
PubMed-ID: 22767484  |  Reference-DOI: 10.1002/ANIE.201203459

(-) Compounds

Molecule 1 - DNA (5'-D(*TP*(IGU)P*(IGU)P*(IGU)P*(IGU)P*T)-3')
    Chains: A, B, C, D, E
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345
NMR Structure (16x): ABCDE
NMR Structure * (1x): ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 20)

NMR Structure (1, 20)
No.NameCountTypeFull Name
1IGU20Mod. Nucleotide2'-DEOXYISOGUANINE-5'-MONOPHOSPHATE
NMR Structure * (1, 20)
No.NameCountTypeFull Name
1IGU20Mod. Nucleotide2'-DEOXYISOGUANINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 2LUJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LUJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LUJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LUJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LUJ)

(-) Exons   (0, 0)

(no "Exon" information available for 2LUJ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:6
                                     
                  2luj A  1 TggggT  6
                             |||| 
                             |||| 
                             2-IGU
                              3-IGU
                               4-IGU
                                5-IGU


Chain B from PDB  Type:DNA  Length:6
                                     
                  2luj B  7 TggggT 12
                             |||| 
                             |||| 
                             8-IGU
                              9-IGU
                              10-IGU
                               11-IGU


Chain C from PDB  Type:DNA  Length:6
                                     
                  2luj C 13 TggggT 18
                             |||| 
                             |||| 
                            14-IGU
                             15-IGU
                              16-IGU
                               17-IGU


Chain D from PDB  Type:DNA  Length:6
                                     
                  2luj D 19 TggggT 24
                             |||| 
                             |||| 
                            20-IGU
                             21-IGU
                              22-IGU
                               23-IGU


Chain E from PDB  Type:DNA  Length:6
                                     
                  2luj E 25 TggggT 30
                             |||| 
                             |||| 
                            26-IGU
                             27-IGU
                              28-IGU
                               29-IGU
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LUJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LUJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LUJ)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2LUJ)

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 Related Entries

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