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(-) Description

Title :  SOLUTION STRUCTURE OF DE NOVO DESIGNED ANTIFREEZE PEPTIDE 3
 
Authors :  A. Bhunia
Date :  21 Feb 12  (Deposition) - 24 Oct 12  (Release) - 26 Dec 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Afp, Antifreeze Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Shah, R. K. Kar, A. A. Asmawi, M. B. Rahman, A. M. Murad, N. M. Mahadi M. Basri, R. N. Rahman, A. B. Salleh, S. Chatterjee, B. A. Tejo, A. Bhuni
Solution Structures, Dynamics, And Ice Growth Inhibitory Activity Of Peptide Fragments Derived From An Antarctic Yeast Protein
Plos One V. 7 49788 2012
PubMed-ID: 23209600  |  Reference-DOI: 10.1371/JOURNAL.PONE.0049788

(-) Compounds

Molecule 1 - DE NOVO DESIGNED ANTIFREEZE PEPTIDE 3
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LQ1)

(-) Sites  (0, 0)

(no "Site" information available for 2LQ1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LQ1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LQ1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LQ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LQ1)

(-) Exons   (0, 0)

(no "Exon" information available for 2LQ1)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:25
 aligned with D0EKL2_9BASI | D0EKL2 from UniProtKB/TrEMBL  Length:177

    Alignment length:25
                                    79        89     
          D0EKL2_9BASI   70 TGNVGLSPGLSTALTGFTLVPVEDH 94
               SCOP domains ------------------------- SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                  2lq1 A  1 TGNVGLSPGLSTALTGFTLVPVEDH 25
                                    10        20
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LQ1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LQ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LQ1)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  Cis Peptide Bonds
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  2lq1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D0EKL2_9BASI | D0EKL2: 2lq0 2lq2

(-) Related Entries Specified in the PDB File

2lq0 2lq2