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(-) Description

Title :  SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING AN UNNATURAL, HYDROPHOBIC BASE PAIR
 
Authors :  D. A. Malyshev, D. A. Pfaff, S. L. Ippoliti, G. T. Hwang, T. J. Dwyer, F. E.
Date :  12 Aug 11  (Deposition) - 04 Jul 12  (Release) - 04 Jul 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (15x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna, Unnatural Base Pair (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Malyshev, D. A. Pfaff, S. I. Ippoliti, G. T. Hwang, T. J. Dwyer, F. E. Romesberg
Solution Structure, Mechanism Of Replication, And Optimization Of An Unnatural Base Pair.
Chemistry V. 16 12650 2010
PubMed-ID: 20859962  |  Reference-DOI: 10.1002/CHEM.201000959

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*TP*TP*TP*CP*(LHO)P*TP*TP*CP*TP*C)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*GP*AP*GP*AP*AP*(MM7)P*GP*AP*AP*AP*CP*G)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (15x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
1LHO1Mod. Nucleotide2-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-6-METHYLISOQUINOLINE-1(2H)-THIONE
2MM71Mod. Nucleotide(1R)-1,4-ANHYDRO-2-DEOXY-1-(2-METHOXY-4-METHYLPHENYL)-5-O-PHOSPHONO-D-ERYTHRO-PENTITOL
NMR Structure * (2, 2)
No.NameCountTypeFull Name
1LHO1Mod. Nucleotide2-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-6-METHYLISOQUINOLINE-1(2H)-THIONE
2MM71Mod. Nucleotide(1R)-1,4-ANHYDRO-2-DEOXY-1-(2-METHOXY-4-METHYLPHENYL)-5-O-PHOSPHONO-D-ERYTHRO-PENTITOL

(-) Sites  (0, 0)

(no "Site" information available for 2LHO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LHO)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LHO)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  2lho A  1 CGTTTCxTTCTC 12
                                  | 10  
                                  7-LHO 


Chain B from PDB  Type:DNA  Length:12
                                           
                  2lho B 13 GAGAAxGAAACG 24
                                 |  22  
                                18-MM7
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LHO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LHO)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

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