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(-) Description

Title :  STRUCTURE OF THE DUPLEX CONTAINING HNE DERIVED (6S,8R,11S) GAMMA-HO-PDG WHEN PLACED OPPOSITE DT
 
Authors :  H. Huang, H. Wang, A. Kozekova, R. S. Lloyd, C. J. Rizzo, M. P. Stone
Date :  19 Jul 11  (Deposition) - 01 Aug 12  (Release) - 01 Aug 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
NMR Structure *:  A,B  (1x)
Keywords :  Trans-4-Hydroxynonenal, Gamma-Ho-Pdg, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Huang, H. Wang, A. Kozekova, R. S. Lloyd, C. J. Rizzo, M. P. Stone
Ring-Chain Tautomerization Of Trans-4-Hydroxynonenal Derive (6S, 8R, 11S) Gamma-Hydroxy-1, N2-Propano-Deoxyguanosine Adduc When Placed Opposite 2'-Deoxythymidine In Duplex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*GP*GP*AP*CP*TP*TP*GP*CP*TP*AP*GP*C)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure : AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1HND1Ligand/Ion(4S)-NONANE-1,4-DIOL
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1HND1Ligand/Ion(4S)-NONANE-1,4-DIOL

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:7 , DA A:8 , DT B:17 , DT B:18 , DG B:19BINDING SITE FOR RESIDUE HND A 25

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LG3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LG3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LG3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LG3)

(-) Exons   (0, 0)

(no "Exon" information available for 2LG3)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  2lg3 A  1 GCTAGCGAGTCC 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  2lg3 B 13 GGACTTGCTAGC 24
                                    22
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LG3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LG3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LG3)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2LG3)

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  2lg3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2lg2