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(-) Description

Title :  N2-DG:N2-DG INTERSTRAND CROSS-LINK INDUCED BY TRANS-4-HYDROXYNONENAL
 
Authors :  H. Huang, I. D. Kozekov, H. Wang, A. Kozekova, C. J. Rizzo, M. P. Stone
Date :  31 Mar 11  (Deposition) - 04 Apr 12  (Release) - 04 Apr 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
NMR Structure *:  A,B  (1x)
Keywords :  Trans-4-Hydroxynonenal, Interstrand Cross-Link, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Huang, H. Wang, A. Kozekova, C. J. Rizzo, M. P. Stone
Formation Of A N2-Dg:N2-Dg Carbinolamine Dna Cross-Link By The Trans-4-Hydroxynonenal-Derived (6S, 8R, 11S) 1, N2-Dg Adduct.
J. Am. Chem. Soc. V. 133 16101 2011
PubMed-ID: 21916419  |  Reference-DOI: 10.1021/JA205145Q

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*TP*AP*GP*CP*GP*AP*GP*TP*CP*C)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*GP*GP*AP*CP*TP*CP*GP*CP*TP*AP*GP*C)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure : AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1HND1Ligand/Ion(4S)-NONANE-1,4-DIOL
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1HND1Ligand/Ion(4S)-NONANE-1,4-DIOL

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:6 , DG A:7 , DC B:18 , DG B:19 , DC B:20BINDING SITE FOR RESIDUE HND B 25

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  2lbi A  1 GCTAGCGAGTCC 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  2lbi B 13 GGACTCGCTAGC 24
                                    22
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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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