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(-) Description

Title :  SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING THE POTENT ANTI-POXVIRUS AGENT CIDOFOVIR
 
Authors :  O. Julien, J. R. Beadle, W. C. Magee, S. Chatterjee, K. Y. Hostetler, D. H B. D. Sykes
Date :  22 Jan 11  (Deposition) - 23 Feb 11  (Release) - 02 Mar 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna, Poxvirus, Hpmpc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Julien, J. R. Beadle, W. C. Magee, S. Chatterjee, K. Y. Hostetler, D. H. Evans, B. D. Sykes
Solution Structure Of A Dna Duplex Containing The Potent Anti-Poxvirus Agent Cidofovir.
J. Am. Chem. Soc. V. 133 2264 2011
PubMed-ID: 21280608  |  Reference-DOI: 10.1021/JA109823E

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*AP*TP*GP*(L8P)P*TP*AP*CP*GP*C)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*GP*CP*GP*TP*AP*GP*CP*AP*TP*GP*CP*G)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1L8P1Mod. Nucleotide({[(2S)-1-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-3-HYDROXYPROPAN-2-YL]OXY}METHYL)PHOSPHONIC ACID
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1L8P1Mod. Nucleotide({[(2S)-1-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-3-HYDROXYPROPAN-2-YL]OXY}METHYL)PHOSPHONIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 2L8P)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L8P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L8P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L8P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2L8P)

(-) Exons   (0, 0)

(no "Exon" information available for 2L8P)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  2l8p A  1 CGCATGxTACGC 12
                                  | 10  
                                  7-L8P 


Chain B from PDB  Type:DNA  Length:12
                                           
                  2l8p B 13 GCGTAGCATGCG 24
                                    22
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L8P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L8P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2L8P)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2L8P)

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  2l8p
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 Related Entries

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