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(-) Description

Title :  QUINDOLINE/G-QUADRUPLEX COMPLEX
 
Authors :  J. Dai, M. Carver, R. Mathad, D. Yang
Date :  23 Dec 10  (Deposition) - 09 Nov 11  (Release) - 16 Nov 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  C-Myc Promoter, Dna-Inhibitor Complex, C-Myc Promoter G-Quadruplex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Dai, M. Carver, L. H. Hurley, D. Yang
Solution Structure Of A 2:1 Quindoline-C-Myc G-Quadruplex: Insights Into G-Quadruplex-Interactive Small Molecule Drug Design.
J. Am. Chem. Soc. V. 133 17673 2011
PubMed-ID: 21967482  |  Reference-DOI: 10.1021/JA205646Q

(-) Compounds

Molecule 1 - DNA (5'- D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)- 3')
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

NMR Structure (2, 4)
No.NameCountTypeFull Name
1K2Ligand/IonPOTASSIUM ION
2QUL2Ligand/IonN,N-DIETHYL-N'-(10H-INDOLO[3,2-B]QUINOLIN-11-YL)ETHANE-1,2-DIAMINE
NMR Structure * (1, 2)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2QUL2Ligand/IonN,N-DIETHYL-N'-(10H-INDOLO[3,2-B]QUINOLIN-11-YL)ETHANE-1,2-DIAMINE

(-) Sites  (4, 4)

NMR Structure (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:7 , DG A:8 , DG A:11 , DG A:12 , DG A:16 , DG A:17 , DG A:20 , DG A:21BINDING SITE FOR RESIDUE K A 26
2AC2SOFTWAREDG A:8 , DG A:9 , DG A:12 , DG A:13 , DG A:17 , DG A:18 , DG A:21 , DG A:22BINDING SITE FOR RESIDUE K A 27
3AC3SOFTWAREDG A:5 , DG A:11 , DG A:16BINDING SITE FOR RESIDUE QUL A 1
4AC4SOFTWAREDG A:9 , DG A:13 , DG A:18 , DT A:23 , DA A:24 , DA A:25BINDING SITE FOR RESIDUE QUL A 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L7V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L7V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L7V)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2L7V)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:22
                                                     
                  2l7v A  4 TGAGGGTGGGTAGGGTGGGTAA 25
                                    13        23
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L7V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L7V)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2L7V)

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