2L56 - JenaLib

NMR Structure - model 1

NMR Structure - model 1, sites

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NMR Structure - model 1 (Jmol Viewer)

NMR Structure - model 1, sites (Jmol Viewer)

NMR Structure - all models (Jmol Viewer)

Description

Title :   NMR STRUCTURE OF THE GCN4 TRIGGER PEPTIDE REFINED USING BIASED MOLECULAR DYNAMICS SIMULATIONS

Authors :   J. H. Missimer, J. Dolenc, M. O. Steinmetz, W. F. Van Gunsteren

Date :   26 Oct 10 (Deposition) - 01 Dec 10 (Release) - 26 Oct 11 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (10x)
NMR Structure *: A  (1x)

Keywords :   Gcn4, Coiled-Coil, Trigger Peptide, Transcription, Molecular Dynamics Simulations (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. H. Missimer, J. Dolenc, M. O. Steinmetz, W. F. Van Gunsteren
Exploring The Trigger Sequence Of The Gcn4 Coiled-Coil: Biased Molecular Dynamics Resolves Apparent Inconsistencies In Nmr Measurements
Protein Sci. V. 19 2462 2010
PubMed-ID: 20954244 | Reference-DOI: 10.1002/PRO.528

Compounds

Molecule 1 - GENERAL CONTROL PROTEIN GCN4
	Chains	:	A
	Engineered	:	YES
	Other Details	:	FMOC SYNTHESIS
	Synthetic	:	YES

Structural Features

Chains, Units

		1
NMR Structure (10x)	:	A
NMR Structure * (1x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 2)

NMR Structure (2, 2)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	NH2	1	Mod. Amino Acid	AMINO GROUP

NMR Structure * (2, 2)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	NH2	1	Mod. Amino Acid	AMINO GROUP

Sites (1, 1)

NMR Structure (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:16 , LEU A:19 , GLU A:20	BINDING SITE FOR RESIDUE ACE A 15

SS Bonds (0, 0)

(no "SS Bond" information available for 2L56)

Cis Peptide Bonds (5, 17)

NMR Structure

No.	Model	Residues
1	1, 3, 4, 6, 8, 9, 10	Asn A:16	-	Tyr A:17
2	2, 3, 4, 9	Tyr A:17	-	His A:18
3	3, 8	Lys A:28	-	Leu A:29
4	4, 8, 9	His A:18	-	Leu A:19
5	9	Ala A:24	-	Arg A:25

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

(no "SAP(SNP)/Variant" information available for 2L56)

PROSITE Motifs (0, 0)

(no "PROSITE Motif" information available for 2L56)

Exons (0, 0)

(no "Exon" information available for 2L56)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:18
                                                 
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                  2l56 A 15 xNYHLENEVARLKKLVGx 32
                            |       24       |
                            |               32-NH2
                           15-ACE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

(no "SCOP Domain" information available for 2L56)

CATH Domains (0, 0)

(no "CATH Domain" information available for 2L56)

Pfam Domains (0, 0)

(no "Pfam Domain" information available for 2L56)

Gene Ontology (0, 0)

NMR Structure(hide GO term definitions)

(no "Gene Ontology" information available for 2L56)

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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:24 - Arg A:25	[ RasMol ]
		Asn A:16 - Tyr A:17	[ RasMol ]
		His A:18 - Leu A:19	[ RasMol ]
		Lys A:28 - Leu A:29	[ RasMol ]
		Tyr A:17 - His A:18	[ RasMol ]

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	2l56
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

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Related Entries Specified in the PDB File

2ovn	NMR STRUCTURE OF THE GCN4 TRIGGER PEPTIDE. THIS ENTRY 2L56 REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL STRUCTURAL DATA (2OVN.MR) DETERMINED BY AUTHORS OF THE PDB ENTRY 2OVN