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(-) Description

Title :  NMR STRUCTURAL STUDIES ON THE COVALENT DNA BINDING OF A PYRROLOBENZODIAZEPINE-NAPHTHALIMIDE CONJUGATE
 
Authors :  M. Rettig, W. Langel, A. Kamal, K. Weisz
Date :  17 May 10  (Deposition) - 02 Jun 10  (Release) - 14 Jul 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (5x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna Duplex, Pyrrolobenzodiazepine, Pbd-Naphthalimide Hybrid, Dna-Drug Complex, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Rettig, W. Langel, A. Kamal, K. Weisz
Nmr Structural Studies On The Covalent Dna Binding Of A Pyrrolobenzodiazepine-Naphthalimide Conjugate
Org. Biomol. Chem. V. 8 3179 2010
PubMed-ID: 20490406  |  Reference-DOI: 10.1039/C001893G

(-) Compounds

Molecule 1 - 5'-D(*AP*AP*CP*AP*AP*TP*TP*GP*TP*T)-3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (5x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1HY21Ligand/Ion2-{2-[4-(3-{[(11AS)-7-METHOXY-5-OXO-2,3,5,10,11,11A-HEXAHYDRO-1H-PYRROLO[2,1-C][1,4]BENZODIAZEPIN-8-YL]OXY}PROPYL)PIPERAZIN-1-YL]ETHYL}-1H-BENZO[DE]ISOQUINOLINE-1,3(2H)-DIONE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1HY21Ligand/Ion2-{2-[4-(3-{[(11AS)-7-METHOXY-5-OXO-2,3,5,10,11,11A-HEXAHYDRO-1H-PYRROLO[2,1-C][1,4]BENZODIAZEPIN-8-YL]OXY}PROPYL)PIPERAZIN-1-YL]ETHYL}-1H-BENZO[DE]ISOQUINOLINE-1,3(2H)-DIONE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:4 , DA A:5 , DT A:6 , DT A:7 , DG A:8 , DT A:9 , DA B:14 , DA B:15 , DT B:16 , DT B:17BINDING SITE FOR RESIDUE HY2 A 21

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KY7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KY7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KY7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2KY7)

(-) Exons   (0, 0)

(no "Exon" information available for 2KY7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  2ky7 A  1 AACAATTGTT 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  2ky7 B 11 AACAATTGTT 20
                                    20
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KY7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KY7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2KY7)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

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