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(-) Description

Title :  STRUCTURE OF GLYCOCIN F
 
Authors :  H. Venugopal, P. Edwards, M. Schwalbe, J. Claridge, J. Stepper, M. Patc T. Loo, D. Libich, G. Norris, S. Pascal
Date :  01 Mar 10  (Deposition) - 04 May 11  (Release) - 18 May 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (12x)
NMR Structure *:  A  (1x)
Keywords :  Bacteriocin, Glycosylation, Lactobacillus, S-Linked, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Venugopal, P. J. Edwards, M. Schwalbe, J. K. Claridge, D. S. Libich, J. Stepper, T. Loo, M. L. Patchett, G. E. Norris, S. M. Pascal
Structural, Dynamic, And Chemical Characterization Of A Novel S-Glycosylated Bacteriocin.
Biochemistry V. 50 2748 2011
PubMed-ID: 21395300  |  Reference-DOI: 10.1021/BI200217U

(-) Compounds

Molecule 1 - PREBACTERIOCIN GLYCOCIN F
    Chains: A
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590

 Structural Features

(-) Chains, Units

  1
NMR Structure (12x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
NMR Structure * (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:17 , SER A:18BINDING SITE FOR RESIDUE NAG A 44
2AC2SOFTWARECYS A:43BINDING SITE FOR RESIDUE NAG A 45

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:5 -A:28
2A:12 -A:21

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KUY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2KUY)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:43
 aligned with GCCF_LACPN | E9K9Z1 from UniProtKB/Swiss-Prot  Length:64

    Alignment length:43
                                    31        41        51        61   
            GCCF_LACPN   22 KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGIKHHSSGSSSYHC 64
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh.......hhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                  2kuy A  1 KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGIKHHSSGSSSYHC 43
                                    10        20        30        40
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KUY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KUY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2KUY)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (GCCF_LACPN | E9K9Z1)
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0050830    defense response to Gram-positive bacterium    Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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